| Definition | Chlamydia muridarum Nigg, complete genome. |
|---|---|
| Accession | NC_002620 |
| Length | 1,072,950 |
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Identifier: 15835108
GI number: 15835108
Start: 595271
End: 597943
Strand: Reverse
Name: Not Available
Synonym: TC0490
Alternate gene names: 15835108
Gene position: 597943-595271 (Counterclockwise)
Preceding gene: 15835112
Following gene: 15835104
Centisome position: 55.73
GC content: 35.69
Gene sequence:
>2673_bases TTGTGGGTATCAAGGAGTGGAGTTATTAGCCAGCTTGTTTTAGTTAGTCTAGTTTTCTATTTTGTATGCGCGATAATTTA CATTTATTCTTTTTTTCTTGTTAAAAGAAGCTGTTTGAAATTATCTCAGCAGCTAAAACGCATCGACATTCCCACTATTT TACATCATGGTTTCTGTGGCAAGGTTATCTACGCAAAACAAGAGAAAAGGGTCACAGATTATTATGTTGCCTATTATCAA AGGGTTCGCACATTTTGCCGAAGATTTCGTTATTTTGGCATTTCTTCAAATCCCATTCTTTTAAAATTCATACAAGATTT TGAGTCGATAACAACTCTTATTAAGAAACATAATAGTGAGATTATAAGTTATTTACTGGATCTTTATAAGGATTTTTTTG ATCGCGTTCTACATTACCCATTGGATGAACAACAAAGACGCTCTATTATATCAGAAGAAGAGAATTGTTTAGTCATTAGC TCTGCAGGAAGTGGGAAAACGTCTTCTATCTTAGGGAAGGTGAGATATCTTATAGAGATTAAGGGAATAGATCCTCGTCG TATAGCTCTGATTAGTTATACCAATAAAGCTTCATCAGAACTTACAAAAAGATTGGCTACGGATGGATTAAGGGGATATA CCTTTCATAAGTTGGCTGTTGACCTAATTGGAAGCATAACAGGAGTTAAACCCTCTATCTGTAGCAATCCTGAGGAGCTT ATTGAGGAGATCTGTCAAAAATTATTGAAAACAAAGGATTTTCTAAAGAACGTATTAAAATATTTTGTTTTTTATGATGA TTGCGAATCTGAAAGGAAAATTCGAGATCAGCTGTCTGAACAAAAGAAACCATTCTTGAAAGCTGTATTCCCTGATATGG ATGGGAAAACGATTTATGTCCGAAGCAAACAAGAGCAAACCACCTGCTTCATTTTATCGTCTTTAGGCATTTCGTTCCGA TATGAAGAACCTTATGAATTTCAAGTAGCAGATGAAACGCATTCCCAATACAGACCGGATTTTTCTCTTTACGTTACTGC GCAGAATGGAAGTTTAAGACGTATCTACCTGGAGCTTTTTGCTATTAATAAACAAGGACGAGTTCCTCCATGGTTTGTTG AAGGGACAAATAAGACTTATAAAGAAGTGAATCAAATATATTTAGATGGGATAGCTTGGAAAAAGCAAACTCATAAGAAG TTCAAAACAGAACTGCTTACTTTAACTAGTGAGGATTTCTACAATTCGAATATTCGGGAGAATATTTGGGATACATTAAG AAAACTCTTAGAAAGAGCAGGCATTCCTATTCAAGAAAAGAAAGAAGAGGATTTATATAACGCTCTTCTTCCTAAAAAAA GCGTTCAAGAGAAAGCACTTATTAAACTTATAGTACGCTTTATTTCTTTAATGAAATCAAATCATAAATCTATTAAGAAA GTGCTATATTGCGCCAAAATCGCTAAAGATATCCCAAGTTCTTGGCTTATTGAAAAGGTTTTTAAACCCGTATACGAACG TTATGTGGATACATTAGCTAAAAGGGGGCAGATTGATTTTACTGACGCTATTTTGCAAGCAACAGAAATTTGTCGTCACT CTAGTTCTGGGAAGTACGATTATATTATCGTCGATGAGTTTCAAGATATTTCTATTGATTGTTGCCGCTTTCTGCAAGAA TTGCGTAAAGGAAATCCTCCCGCTAAGATGTATTGCGTTGGGGATGATTGGCAGTCTATCTATCGATTTGCGGGAAGTAA TATCACTGTGTTCAATCAGTTTTCCGATTATTTTGGTCCACAAGAGATCCATAGACTAGAGACTACCTACAGGTTGGGAG AGCCTTTGGTCTCTTTGTCTTCTAGCTTTGTACAACGTAATAATTTTCAAATACGAAAAGATTGCCGTTCCTTTAATCCA GATATTAGGACTGAGTTAGTATTTCGCTCTTATTATCACAGGTCTGAAAAGGATTATTGCTCTTGTTTAGAGCTGGAGAT TTCTAAGATTCCAGAAGATAAATCCATCTTTTTATTAGGGAGGTATTCATTTGATGACTATTATCTATCCAAAAAGTATC AGCTTGTTAAAACAGGGAGCAATTTTTTTTATATAATCGGAAATAGAAAAATAGAATTCCTTACTGTACACAAGTCAAAA GGACTTGAAGCTGATTACGTAATTTTGCTTCAATGCAACGCAGACCGTTATGGATTTCCTAGTCTTGTTACAGATAACAA AGTGTTTAACTATGTTTTATCAGAAAGCGATTCTTTTCCGTTTAGCGAGGAGCGGAGATTATTCTATGTTGCAATAACAC GAGCTAAGATCAAAACTACAGTCCTTTATGATAAAAAATTCCCTTCAGAGTTTGTTAAAGAGTTTATAAAAGTGGACGAG AAAAGAGCTCAAGTTCCTAGAACGCCCGTAAATGCCTATAAGATTTGGACACGCAGCGAGGAGTCTCTTTTGTTACAACT TTGTAAGGGGATGAGTGTTAAGGACATCGCTACGCAAACGGGACGTAGCCCAACTGCTATAACAGCAAGATTACGCAAGC TGCAAAAAGTAGGATTGTCGAAACGACCACAATTCGTCAAATCACATAATTCCTTTATAAGGAAAAAGCGTTTTTGTCGT CCTGAATGGAAACAGTCTTCTCGACGTTATTAG
Upstream 100 bases:
>100_bases AAAACTATTTTTCTTTTTAAATATCGACAATCAACTATTAAGCGTTCTATTATTTGTAGATTATTTAGAGATTCGAGACG TTTTATTAGACTAAAAACAA
Downstream 100 bases:
>100_bases CTTTAATAAGCCCCGATTCTCTAACAGCTAAAGCAATGTTATGCCTTGCTTGAGGAAATATCGTTTCTAAGGTTTTTAGA GCTTCTTCGGTTTTGGTTCG
Product: UvrD/REP helicase family protein
Products: NA
Alternate protein names: 75 kDa helicase [H]
Number of amino acids: Translated: 890; Mature: 890
Protein sequence:
>890_residues MWVSRSGVISQLVLVSLVFYFVCAIIYIYSFFLVKRSCLKLSQQLKRIDIPTILHHGFCGKVIYAKQEKRVTDYYVAYYQ RVRTFCRRFRYFGISSNPILLKFIQDFESITTLIKKHNSEIISYLLDLYKDFFDRVLHYPLDEQQRRSIISEEENCLVIS SAGSGKTSSILGKVRYLIEIKGIDPRRIALISYTNKASSELTKRLATDGLRGYTFHKLAVDLIGSITGVKPSICSNPEEL IEEICQKLLKTKDFLKNVLKYFVFYDDCESERKIRDQLSEQKKPFLKAVFPDMDGKTIYVRSKQEQTTCFILSSLGISFR YEEPYEFQVADETHSQYRPDFSLYVTAQNGSLRRIYLELFAINKQGRVPPWFVEGTNKTYKEVNQIYLDGIAWKKQTHKK FKTELLTLTSEDFYNSNIRENIWDTLRKLLERAGIPIQEKKEEDLYNALLPKKSVQEKALIKLIVRFISLMKSNHKSIKK VLYCAKIAKDIPSSWLIEKVFKPVYERYVDTLAKRGQIDFTDAILQATEICRHSSSGKYDYIIVDEFQDISIDCCRFLQE LRKGNPPAKMYCVGDDWQSIYRFAGSNITVFNQFSDYFGPQEIHRLETTYRLGEPLVSLSSSFVQRNNFQIRKDCRSFNP DIRTELVFRSYYHRSEKDYCSCLELEISKIPEDKSIFLLGRYSFDDYYLSKKYQLVKTGSNFFYIIGNRKIEFLTVHKSK GLEADYVILLQCNADRYGFPSLVTDNKVFNYVLSESDSFPFSEERRLFYVAITRAKIKTTVLYDKKFPSEFVKEFIKVDE KRAQVPRTPVNAYKIWTRSEESLLLQLCKGMSVKDIATQTGRSPTAITARLRKLQKVGLSKRPQFVKSHNSFIRKKRFCR PEWKQSSRRY
Sequences:
>Translated_890_residues MWVSRSGVISQLVLVSLVFYFVCAIIYIYSFFLVKRSCLKLSQQLKRIDIPTILHHGFCGKVIYAKQEKRVTDYYVAYYQ RVRTFCRRFRYFGISSNPILLKFIQDFESITTLIKKHNSEIISYLLDLYKDFFDRVLHYPLDEQQRRSIISEEENCLVIS SAGSGKTSSILGKVRYLIEIKGIDPRRIALISYTNKASSELTKRLATDGLRGYTFHKLAVDLIGSITGVKPSICSNPEEL IEEICQKLLKTKDFLKNVLKYFVFYDDCESERKIRDQLSEQKKPFLKAVFPDMDGKTIYVRSKQEQTTCFILSSLGISFR YEEPYEFQVADETHSQYRPDFSLYVTAQNGSLRRIYLELFAINKQGRVPPWFVEGTNKTYKEVNQIYLDGIAWKKQTHKK FKTELLTLTSEDFYNSNIRENIWDTLRKLLERAGIPIQEKKEEDLYNALLPKKSVQEKALIKLIVRFISLMKSNHKSIKK VLYCAKIAKDIPSSWLIEKVFKPVYERYVDTLAKRGQIDFTDAILQATEICRHSSSGKYDYIIVDEFQDISIDCCRFLQE LRKGNPPAKMYCVGDDWQSIYRFAGSNITVFNQFSDYFGPQEIHRLETTYRLGEPLVSLSSSFVQRNNFQIRKDCRSFNP DIRTELVFRSYYHRSEKDYCSCLELEISKIPEDKSIFLLGRYSFDDYYLSKKYQLVKTGSNFFYIIGNRKIEFLTVHKSK GLEADYVILLQCNADRYGFPSLVTDNKVFNYVLSESDSFPFSEERRLFYVAITRAKIKTTVLYDKKFPSEFVKEFIKVDE KRAQVPRTPVNAYKIWTRSEESLLLQLCKGMSVKDIATQTGRSPTAITARLRKLQKVGLSKRPQFVKSHNSFIRKKRFCR PEWKQSSRRY >Mature_890_residues MWVSRSGVISQLVLVSLVFYFVCAIIYIYSFFLVKRSCLKLSQQLKRIDIPTILHHGFCGKVIYAKQEKRVTDYYVAYYQ RVRTFCRRFRYFGISSNPILLKFIQDFESITTLIKKHNSEIISYLLDLYKDFFDRVLHYPLDEQQRRSIISEEENCLVIS SAGSGKTSSILGKVRYLIEIKGIDPRRIALISYTNKASSELTKRLATDGLRGYTFHKLAVDLIGSITGVKPSICSNPEEL IEEICQKLLKTKDFLKNVLKYFVFYDDCESERKIRDQLSEQKKPFLKAVFPDMDGKTIYVRSKQEQTTCFILSSLGISFR YEEPYEFQVADETHSQYRPDFSLYVTAQNGSLRRIYLELFAINKQGRVPPWFVEGTNKTYKEVNQIYLDGIAWKKQTHKK FKTELLTLTSEDFYNSNIRENIWDTLRKLLERAGIPIQEKKEEDLYNALLPKKSVQEKALIKLIVRFISLMKSNHKSIKK VLYCAKIAKDIPSSWLIEKVFKPVYERYVDTLAKRGQIDFTDAILQATEICRHSSSGKYDYIIVDEFQDISIDCCRFLQE LRKGNPPAKMYCVGDDWQSIYRFAGSNITVFNQFSDYFGPQEIHRLETTYRLGEPLVSLSSSFVQRNNFQIRKDCRSFNP DIRTELVFRSYYHRSEKDYCSCLELEISKIPEDKSIFLLGRYSFDDYYLSKKYQLVKTGSNFFYIIGNRKIEFLTVHKSK GLEADYVILLQCNADRYGFPSLVTDNKVFNYVLSESDSFPFSEERRLFYVAITRAKIKTTVLYDKKFPSEFVKEFIKVDE KRAQVPRTPVNAYKIWTRSEESLLLQLCKGMSVKDIATQTGRSPTAITARLRKLQKVGLSKRPQFVKSHNSFIRKKRFCR PEWKQSSRRY
Specific function: Helicase IV catalyzes the unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand in a reaction that is dependent upon the hydrolysis of ATP [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787196, Length=354, Percent_Identity=30.5084745762712, Blast_Score=161, Evalue=1e-40, Organism=Escherichia coli, GI2367296, Length=155, Percent_Identity=29.0322580645161, Blast_Score=66, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 - InterPro: IPR022161 - InterPro: IPR003661 [H]
Pfam domain/function: PF12462 Nucleolin_N; PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 104370; Mature: 104370
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWVSRSGVISQLVLVSLVFYFVCAIIYIYSFFLVKRSCLKLSQQLKRIDIPTILHHGFCG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCC KVIYAKQEKRVTDYYVAYYQRVRTFCRRFRYFGISSNPILLKFIQDFESITTLIKKHNSE CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH IISYLLDLYKDFFDRVLHYPLDEQQRRSIISEEENCLVISSAGSGKTSSILGKVRYLIEI HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHEEEEEEE KGIDPRRIALISYTNKASSELTKRLATDGLRGYTFHKLAVDLIGSITGVKPSICSNPEEL ECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHCCCHHHH IEEICQKLLKTKDFLKNVLKYFVFYDDCESERKIRDQLSEQKKPFLKAVFPDMDGKTIYV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEE RSKQEQTTCFILSSLGISFRYEEPYEFQVADETHSQYRPDFSLYVTAQNGSLRRIYLELF ECCCCCHHEEEEECCCCEEEECCCCEEEECCCHHHHCCCCEEEEEEECCCCHHEEEEEHH AINKQGRVPPWFVEGTNKTYKEVNQIYLDGIAWKKQTHKKFKTELLTLTSEDFYNSNIRE EECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHCCCHHH NIWDTLRKLLERAGIPIQEKKEEDLYNALLPKKSVQEKALIKLIVRFISLMKSNHKSIKK HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH VLYCAKIAKDIPSSWLIEKVFKPVYERYVDTLAKRGQIDFTDAILQATEICRHSSSGKYD HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEE YIIVDEFQDISIDCCRFLQELRKGNPPAKMYCVGDDWQSIYRFAGSNITVFNQFSDYFGP EEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCCEEEEECHHHCCCH QEIHRLETTYRLGEPLVSLSSSFVQRNNFQIRKDCRSFNPDIRTELVFRSYYHRSEKDYC HHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH SCLELEISKIPEDKSIFLLGRYSFDDYYLSKKYQLVKTGSNFFYIIGNRKIEFLTVHKSK HHHHHHHHHCCCCCCEEEEEECCCCHHHHCCCEEEEEECCCEEEEEECCEEEEEEEECCC GLEADYVILLQCNADRYGFPSLVTDNKVFNYVLSESDSFPFSEERRLFYVAITRAKIKTT CCCCCEEEEEEECCCCCCCCCCEECCHHHHHHHCCCCCCCCCCCCEEEEEEEEEHHEEEE VLYDKKFPSEFVKEFIKVDEKRAQVPRTPVNAYKIWTRSEESLLLQLCKGMSVKDIATQT EEECCCCCHHHHHHHHHHCHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHC GRSPTAITARLRKLQKVGLSKRPQFVKSHNSFIRKKRFCRPEWKQSSRRY CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCC >Mature Secondary Structure MWVSRSGVISQLVLVSLVFYFVCAIIYIYSFFLVKRSCLKLSQQLKRIDIPTILHHGFCG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCC KVIYAKQEKRVTDYYVAYYQRVRTFCRRFRYFGISSNPILLKFIQDFESITTLIKKHNSE CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH IISYLLDLYKDFFDRVLHYPLDEQQRRSIISEEENCLVISSAGSGKTSSILGKVRYLIEI HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHEEEEEEE KGIDPRRIALISYTNKASSELTKRLATDGLRGYTFHKLAVDLIGSITGVKPSICSNPEEL ECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHCCCHHHH IEEICQKLLKTKDFLKNVLKYFVFYDDCESERKIRDQLSEQKKPFLKAVFPDMDGKTIYV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEE RSKQEQTTCFILSSLGISFRYEEPYEFQVADETHSQYRPDFSLYVTAQNGSLRRIYLELF ECCCCCHHEEEEECCCCEEEECCCCEEEECCCHHHHCCCCEEEEEEECCCCHHEEEEEHH AINKQGRVPPWFVEGTNKTYKEVNQIYLDGIAWKKQTHKKFKTELLTLTSEDFYNSNIRE EECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHCCCHHH NIWDTLRKLLERAGIPIQEKKEEDLYNALLPKKSVQEKALIKLIVRFISLMKSNHKSIKK HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH VLYCAKIAKDIPSSWLIEKVFKPVYERYVDTLAKRGQIDFTDAILQATEICRHSSSGKYD HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEE YIIVDEFQDISIDCCRFLQELRKGNPPAKMYCVGDDWQSIYRFAGSNITVFNQFSDYFGP EEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCCEEEEECHHHCCCH QEIHRLETTYRLGEPLVSLSSSFVQRNNFQIRKDCRSFNPDIRTELVFRSYYHRSEKDYC HHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH SCLELEISKIPEDKSIFLLGRYSFDDYYLSKKYQLVKTGSNFFYIIGNRKIEFLTVHKSK HHHHHHHHHCCCCCCEEEEEECCCCHHHHCCCEEEEEECCCEEEEEECCEEEEEEEECCC GLEADYVILLQCNADRYGFPSLVTDNKVFNYVLSESDSFPFSEERRLFYVAITRAKIKTT CCCCCEEEEEEECCCCCCCCCCEECCHHHHHHHCCCCCCCCCCCCEEEEEEEEEHHEEEE VLYDKKFPSEFVKEFIKVDEKRAQVPRTPVNAYKIWTRSEESLLLQLCKGMSVKDIATQT EEECCCCCHHHHHHHHHHCHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHC GRSPTAITARLRKLQKVGLSKRPQFVKSHNSFIRKKRFCRPEWKQSSRRY CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2542273; 8905232; 9278503 [H]