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Identifier: 15835074

GI number: 15835074

Start: 554358

End: 554804

Strand: Direct

Name: Not Available

Synonym: TC0456

Alternate gene names: NA

Gene position: 554358-554804 (Clockwise)

Preceding gene: 15835073

Following gene: 15835075

Centisome position: 51.67

GC content: 41.16

Gene sequence:

>447_bases
GTGAATAGCATGAAACAAAAAGAGGCTTTTTTAGGAGTGGATTATGGGAAAAAACGTATTGGTCTAGCCTTTGCTAGCGC
TCCTCTTTTGATCACGCTACCTATAGGAAGCATTAATACCTGTTCATCCCTTGCTTTAACAGCTCAAGCTCTTATTACTA
TTATTAAAGAGCGCGCTGTCACTACTGTAGTGTTTGGAAATCCGTTGCCCATGCAAAAAAGCTATGCTTCTAGCGTGCAG
TCAGAAATTCAGGAGTTAGCCGCGCTCGTTCGAGATATGACCTCTTTAGAGGTCATCCTTTGGGATGAGCGCCTGTCCTC
AGCACAAGCCGAACGTATGTTAAAGAACGATTGCGGTCTAAGCAGAAAACAACGTAAAAATTCTTCTGATAGTCTTGCTG
CAACATTAATCCTTTCTAGTTTTTTAGATTCTCGCAAATTATATTAG

Upstream 100 bases:

>100_bases
GTACAATTCCATCCTGAATTTTTATCAAAACTAGCTGCTCCCCATCCTCTTTTTGTAAAATTTCTTAGCGCTGCTCTAGA
CTATTCTTTGGAGAAAGGTC

Downstream 100 bases:

>100_bases
AGCCGGCTCATGATAAAGCCTGTGTTTAGGAAAGAAATCTTTTTAGGCACATATTCCTATTTTTGGTATCGTGGGCTTTT
TCTTTAAAAATTAACACTCT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTVVFGNPLPMQKSYASSVQ
SEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRKQRKNSSDSLAATLILSSFLDSRKLY

Sequences:

>Translated_148_residues
MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTVVFGNPLPMQKSYASSVQ
SEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRKQRKNSSDSLAATLILSSFLDSRKLY
>Mature_148_residues
MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTVVFGNPLPMQKSYASSVQ
SEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRKQRKNSSDSLAATLILSSFLDSRKLY

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CHLMU (Q9PKK9)

Other databases:

- EMBL:   AE002160
- PIR:   E81700
- RefSeq:   NP_296833.1
- ProteinModelPortal:   Q9PKK9
- SMR:   Q9PKK9
- GeneID:   1245811
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0456
- TIGR:   TC_0456
- HOGENOM:   HBG607919
- OMA:   VEVILWD
- ProtClustDB:   PRK00109
- BioCyc:   CMUR243161:TC_0456-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16200; Mature: 16200

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAV
CCCHHHHHHHHCCCCCCHHHHHEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
TTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGL
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCC
SRKQRKNSSDSLAATLILSSFLDSRKLY
CHHHHCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAV
CCCHHHHHHHHCCCCCCHHHHHEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
TTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGL
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCC
SRKQRKNSSDSLAATLILSSFLDSRKLY
CHHHHCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935