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The map label for this gene is sctN

Identifier: 15834665

GI number: 15834665

Start: 44843

End: 46171

Strand: Direct

Name: sctN

Synonym: TC0040

Alternate gene names: 15834665

Gene position: 44843-46171 (Clockwise)

Preceding gene: 15834664

Following gene: 15834666

Centisome position: 4.18

GC content: 44.92

Gene sequence:

>1329_bases
ATGAAAGAGCTAACGACCGAGTTTGATACGCTCATGACTGAATTGCCAGAAGTTCAATTGACGGCAGTTGTTGGGCGTAT
TATCGAAGTTGTCGGGATGTTAATCAAAGCTGTCGTTCCGGATGTTCGGGTGGGCGAAGTTTGCCTGGTGAAACGTCATG
GAATGGAGCCTTTGGTAACAGAGGTTGTCGGGTTTACGCAGAACTTTGTATTTCTCTCTCCTTTAGGAGAGTTATCTGGA
GTGAGTCCTTCTTCTGAAGTGATCGCCACGGGATTGCCTTTGCACATTCGAGCAGGGGCAGGACTTTTAGGCCGTGTATT
GAATGGTCTTGGAGAACCTATTGATATAGAGACCAAAGGACCTTTGGAGAATGTCGATTCCATTTATCCCATTTTTAAAG
CTCCACCAGATCCTTTGCATCGAGAAAAATTGCGTACGATTCTATCTACAGGAGTGCGTTGTATAGATGGAATGCTTACT
GTTGCCAAAGGACAAAGAATCGGGATTTTTGCGGGAGCAGGGGTCGGAAAATCTTCTTTGTTAGGCATGATTGCTCGTAA
CGCAGAAGAAGCCGATATTAACGTGATTGCGTTAATTGGAGAGCGGGGACGAGAAGTTCGGGAGTTTATAGAAAATGACC
TTGGTGAAGAAGGAATGAAACGTTCCGTCATTGTGGTATCTACTTCCGATCAATCTTCTCAGCTTCGATTGAACGCTGCT
TATGTGGGAACAGCTATAGCAGAATATTTTAGGGACCAGGGTAAGACAGTTGTGCTTATGATGGATTCTGTGACCCGGTT
TGCTCGAGCTTTACGGGAAGTAGGGCTCGCAGCTGGAGAGCCTCCTGCTCGTGCTGGGTATACTCCTTCCGTATTTTCAA
CATTGCCCAAATTATTGGAAAGAGCGGGAGCTTCGGAGAAAGGGACTATCACGGCATTTTATACCGTGTTAGTTGCTGGG
GATGATATGAATGAGCCGGTGGCTGATGAGGTGAAGTCTATTTTGGATGGGCATATCGTGCTTTCCAACGCGTTAGCTCA
AGCTTATCATTATCCTGCGATTGATGTGCTGGCTTCTATTAGCCGATTATTGACTGCAATTGTTCCTGAAGAACAACGTC
GAATTATTGGTCGTGCTAGGGAAGTCTTAGCGAAATATAAAGCGAACGAGATGTTGATTCGTATTGGGGAATATCGTCGA
GGGTCTGATCGTGAGGTAGATTTCGCGATTGACCATATTGATAAATTGAATCGTTTCCTCAAGCAAGATATTCATGAAAA
AACAAATTATGAGGAAGCTGCTCAGCAGTTGAGAGCAATATTCCGGTAA

Upstream 100 bases:

>100_bases
GCTGTTCAAAGAGCTACACAGCGATCCGAGTTATTTGCCAGTATTTTAGGAGCCTCGGTAAGTAGTATAAAAACGATCAT
GACAACACAATTAGGTTAAC

Downstream 100 bases:

>100_bases
GTTTGGAAAATAGTAGGATTGTGTGGTTAGATATCCTTTAGAACCTGTCTTATCCATTAAGAAAGATCGTGTTGACAGGG
CAGAAAAGGTTGTTAAGGAG

Product: type III secretion system ATPase

Products: NA

Alternate protein names: Yop proteins secretion ATPase [H]

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MKELTTEFDTLMTELPEVQLTAVVGRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELSG
VSPSSEVIATGLPLHIRAGAGLLGRVLNGLGEPIDIETKGPLENVDSIYPIFKAPPDPLHREKLRTILSTGVRCIDGMLT
VAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGREVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAA
YVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASEKGTITAFYTVLVAG
DDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLAKYKANEMLIRIGEYRR
GSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIFR

Sequences:

>Translated_442_residues
MKELTTEFDTLMTELPEVQLTAVVGRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELSG
VSPSSEVIATGLPLHIRAGAGLLGRVLNGLGEPIDIETKGPLENVDSIYPIFKAPPDPLHREKLRTILSTGVRCIDGMLT
VAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGREVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAA
YVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASEKGTITAFYTVLVAG
DDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLAKYKANEMLIRIGEYRR
GSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIFR
>Mature_442_residues
MKELTTEFDTLMTELPEVQLTAVVGRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELSG
VSPSSEVIATGLPLHIRAGAGLLGRVLNGLGEPIDIETKGPLENVDSIYPIFKAPPDPLHREKLRTILSTGVRCIDGMLT
VAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGREVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAA
YVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASEKGTITAFYTVLVAG
DDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLAKYKANEMLIRIGEYRR
GSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIFR

Specific function: Is a component of the Yop secretion machinery using ATP, and it is either the energizer of this machinery, or part of it [H]

COG id: COG1157

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway ATPase

Gene ontology:

Cell location: Cytoplasm. Note=But connected to the inner membrane possibly through LcrD (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=431, Percent_Identity=31.0904872389791, Blast_Score=168, Evalue=1e-41,
Organism=Homo sapiens, GI19913428, Length=302, Percent_Identity=30.4635761589404, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI50345984, Length=311, Percent_Identity=29.2604501607717, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI4757810, Length=311, Percent_Identity=29.2604501607717, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI19913426, Length=301, Percent_Identity=29.5681063122924, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI19913424, Length=236, Percent_Identity=30.5084745762712, Blast_Score=108, Evalue=1e-23,
Organism=Escherichia coli, GI1788251, Length=446, Percent_Identity=44.8430493273543, Blast_Score=350, Evalue=1e-97,
Organism=Escherichia coli, GI1790170, Length=404, Percent_Identity=30.6930693069307, Blast_Score=162, Evalue=5e-41,
Organism=Escherichia coli, GI1790172, Length=365, Percent_Identity=29.3150684931507, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI1790217, Length=262, Percent_Identity=27.0992366412214, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25144756, Length=416, Percent_Identity=31.7307692307692, Blast_Score=158, Evalue=4e-39,
Organism=Caenorhabditis elegans, GI71988080, Length=356, Percent_Identity=27.8089887640449, Blast_Score=125, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71988063, Length=356, Percent_Identity=27.8089887640449, Blast_Score=125, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17510931, Length=287, Percent_Identity=29.616724738676, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17570191, Length=299, Percent_Identity=28.4280936454849, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17565854, Length=256, Percent_Identity=30.859375, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71988074, Length=336, Percent_Identity=26.7857142857143, Blast_Score=110, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6322581, Length=431, Percent_Identity=30.3944315545244, Blast_Score=169, Evalue=8e-43,
Organism=Saccharomyces cerevisiae, GI6319370, Length=356, Percent_Identity=28.9325842696629, Blast_Score=135, Evalue=1e-32,
Organism=Saccharomyces cerevisiae, GI6319603, Length=376, Percent_Identity=27.9255319148936, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6320016, Length=189, Percent_Identity=33.8624338624339, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24638766, Length=417, Percent_Identity=31.89448441247, Blast_Score=169, Evalue=3e-42,
Organism=Drosophila melanogaster, GI28574560, Length=414, Percent_Identity=31.4009661835749, Blast_Score=151, Evalue=1e-36,
Organism=Drosophila melanogaster, GI24658560, Length=311, Percent_Identity=30.2250803858521, Blast_Score=122, Evalue=7e-28,
Organism=Drosophila melanogaster, GI281361666, Length=302, Percent_Identity=29.1390728476821, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24646341, Length=302, Percent_Identity=29.1390728476821, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI17136796, Length=302, Percent_Identity=29.1390728476821, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24583992, Length=236, Percent_Identity=30.9322033898305, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI20129479, Length=233, Percent_Identity=30.9012875536481, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583988, Length=236, Percent_Identity=30.9322033898305, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583986, Length=236, Percent_Identity=30.9322033898305, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583984, Length=236, Percent_Identity=30.9322033898305, Blast_Score=109, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR004100
- InterPro:   IPR005714
- InterPro:   IPR013380 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 48242; Mature: 48242

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELTTEFDTLMTELPEVQLTAVVGRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVT
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHCCCCHHHH
EVVGFTQNFVFLSPLGELSGVSPSSEVIATGLPLHIRAGAGLLGRVLNGLGEPIDIETKG
HHHHHHCCEEEECCCHHHCCCCCCCHHHCCCCCEEEECCCHHHHHHHHHCCCCEECCCCC
PLENVDSIYPIFKAPPDPLHREKLRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSL
CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH
LGMIARNAEEADINVIALIGERGREVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAA
HHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEHHH
YVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLE
HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
RAGASEKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASI
HCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHH
SRLLTAIVPEEQRRIIGRAREVLAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHH
KQDIHEKTNYEEAAQQLRAIFR
HHHHHHCCCHHHHHHHHHHHHC
>Mature Secondary Structure
MKELTTEFDTLMTELPEVQLTAVVGRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVT
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHCCCCHHHH
EVVGFTQNFVFLSPLGELSGVSPSSEVIATGLPLHIRAGAGLLGRVLNGLGEPIDIETKG
HHHHHHCCEEEECCCHHHCCCCCCCHHHCCCCCEEEECCCHHHHHHHHHCCCCEECCCCC
PLENVDSIYPIFKAPPDPLHREKLRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSL
CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH
LGMIARNAEEADINVIALIGERGREVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAA
HHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEHHH
YVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLE
HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
RAGASEKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASI
HCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHH
SRLLTAIVPEEQRRIIGRAREVLAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHH
KQDIHEKTNYEEAAQQLRAIFR
HHHHHHCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8132449; 2160939 [H]