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The map label for this gene is rad25

Identifier: 16120082

GI number: 16120082

Start: 95437

End: 96846

Strand: Reverse

Name: rad25

Synonym: VNG6130G

Alternate gene names: 16120082

Gene position: 96846-95437 (Counterclockwise)

Preceding gene: 16120091

Following gene: 16120081

Centisome position: 26.5

GC content: 58.16

Gene sequence:

>1410_bases
ATGCGTCTCGCGTTCGATGATGGCACTCTCCTGCTCGAAGACGCGCCCAATTCAGTTCCCTACGCGGACTGGGATGACCG
CGTCGACGAGTATCGAGCGCGTGCCCTCCACTATCAAGACCTCTGCCAATGGGCACAGGGCCCCGATGGGCAAGCCACGC
TGAATCAGGCTTCACACACCGACGAGTCCCTCCATGATGACGCTCGCGCCTACCGTGATCTTGATCTCACACCTGCTGTT
GCTATCGAACCCCGTGATTACCAGCAGGCCGCGTTAGCTGCTTGGACCGACCACGACCGCCGTGGCAGCGTTGTCCTCCC
GACGGGGAGTGGCAAGACGTTCCTTGCTGTCCAAGCCATTGCTGACGCTTCCGTCAGTACCCTTGTTGTCGTCCCAACAA
TTGACCTGCTGAACCAGTGGCACGCCACCCTCACCAACGCCTTCGGTGACCAACTCCCCCACGAGATTGGCGTACTTGGC
GGCGGCAGCCACAACGTCACCGACATCACAGTAACAACCTATGACTCTGCGTATCGCTACATCAACGAGTACGGCGACCA
GTTCGGCCTGCTCGTCGTCGACGAGGTCCATCACCTCCCGGCCCCAACCTACCAGCAAATCCCGGAAATGACGATTGCCC
CGTACCGGCTCGGCCTGACTGCGACCTACGAACGCACTGATGGGGAACACAACGTCTTGGAAGACCTGATTGGCCCCGTC
GTCTACGAGGAGAACGTCGACGAACTCGCCGGAGAGTACCTCAGCGAATACGAAACCATCCACCTGAAGGTTGACCTCAC
ACCCGAAGAACGCAACCAGTACGACGACGAGTACCAGATCTACCGCGACTACCTAGACAATCACGATGTCGATATCTGGA
AACAGGACGGCTATCAGGAATTCCTCAAACGCACGTCCTACGACCCGGACGGTCGTCGCGCTCTCATCGCCAAGCAACGT
GCCGAGGAAATCGCCCGCACCGCCGAGAAGAAACTCGACACCCTCGACAACCTACTGAAACGCCACTACAACGACCGAAC
CATCATCTTCACCGCAAACAACGACTTTGCCTATGACATCTCTCAGGAGTTCATCGTCCCCTGTATCACTCACCAGACCC
AGACAGACGAGCGCACAGAAATCCTAGAACGGTTCCGAACAGGCGAGTACTCAATGCTCGTCACGTCACAGGTGCTTGAC
GAAGGAATCGACGTCCCTGCAGCGAACGTCGGGATTATTCTCTCTGGGAGTGCATCGAAACGCCAGTACGCTCAGCGTCT
CGGCCGGATTCTCCGCCCCACAGAAGACCGTGAACCAGCACGACTCTACGAACTCATCACCGACGACACGATGGAGCAGT
ACGTCTCCAAGCGCCGCCGCCAGGGGGTGACAACGAATGCTGACAGCTGA

Upstream 100 bases:

>100_bases
TTGGTATCTCCCTAAGAGAGCCTGAAATGTACCCTATGGCATGCTACTGTACCTGTAGTCCCGCAAGGACAAGTACCGCG
AAATACGTACCACACCCCAA

Downstream 100 bases:

>100_bases
CCTCGCCCGCTCGCGGACGCGAGACGGAACAGTCACGCCGCTATTCATCGATACAGATGAACCACAGTATCGAGAGACAG
CAGCGGAACTCATTCAGTTA

Product: DNA repair protein

Products: NA

Alternate protein names: Type III Restriction Res Subunit; DNA Repair Helicase; Helicase Domain Protein; Helicase Domain-Containing Protein; Helicase; ATP-Dependent DNA Helicase; DNA Repair Helicase RAD; Type III Restriction Res Subunit Family; Superfamily II DNA/RNA Helicase; DNA Repair Helicase Rad; DNA Repair Protein Rad; DNA Helicase; DNA Repair Protein RAD; DNA/RNA Helicase; ATP-Dependent Helicase; DNA Repair Protein; DNA/RNA Helicase Superfamily II; Helicase-Like Protein; Helicase Protein; DNA Or RNA Helicase Of Superfamily II; DNA/RNA Repair Helicase; Phage DEAD Box Family Helicase; Helicase ATP-Dependent; ATP-Dependent RNA Helicase; Type III Restriction- System Subunit Res; DNA Repair DNA/RNA Helicase; Helicase DNA Repair; Helicase-Related Protein; DEAD/DEAH Box Helicase Domain-Containing Protein; ATP-Dependet DEAD/DEAH Box Helicase; DNA Or RNA Helicase; Helicase DNA Repair Rad; RAD25-Type DNA Repair Helicase; DNA Repair Related Protein; Restriction; RNA Polymerase Sigma; DEAD/DEAH Box Helicase-Like; Restriction Endonuclease Family Protein; DNA-Helicase; Nucleic Acid ATP-Dependent Helicase; XPB/RAD25-Related Helicase; Helicase ATP-Dependent Intein-Containing; DNA Or RNA Helicase Of Superfamily Protein II; DEAD/DEAH Box Helicase

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MRLAFDDGTLLLEDAPNSVPYADWDDRVDEYRARALHYQDLCQWAQGPDGQATLNQASHTDESLHDDARAYRDLDLTPAV
AIEPRDYQQAALAAWTDHDRRGSVVLPTGSGKTFLAVQAIADASVSTLVVVPTIDLLNQWHATLTNAFGDQLPHEIGVLG
GGSHNVTDITVTTYDSAYRYINEYGDQFGLLVVDEVHHLPAPTYQQIPEMTIAPYRLGLTATYERTDGEHNVLEDLIGPV
VYEENVDELAGEYLSEYETIHLKVDLTPEERNQYDDEYQIYRDYLDNHDVDIWKQDGYQEFLKRTSYDPDGRRALIAKQR
AEEIARTAEKKLDTLDNLLKRHYNDRTIIFTANNDFAYDISQEFIVPCITHQTQTDERTEILERFRTGEYSMLVTSQVLD
EGIDVPAANVGIILSGSASKRQYAQRLGRILRPTEDREPARLYELITDDTMEQYVSKRRRQGVTTNADS

Sequences:

>Translated_469_residues
MRLAFDDGTLLLEDAPNSVPYADWDDRVDEYRARALHYQDLCQWAQGPDGQATLNQASHTDESLHDDARAYRDLDLTPAV
AIEPRDYQQAALAAWTDHDRRGSVVLPTGSGKTFLAVQAIADASVSTLVVVPTIDLLNQWHATLTNAFGDQLPHEIGVLG
GGSHNVTDITVTTYDSAYRYINEYGDQFGLLVVDEVHHLPAPTYQQIPEMTIAPYRLGLTATYERTDGEHNVLEDLIGPV
VYEENVDELAGEYLSEYETIHLKVDLTPEERNQYDDEYQIYRDYLDNHDVDIWKQDGYQEFLKRTSYDPDGRRALIAKQR
AEEIARTAEKKLDTLDNLLKRHYNDRTIIFTANNDFAYDISQEFIVPCITHQTQTDERTEILERFRTGEYSMLVTSQVLD
EGIDVPAANVGIILSGSASKRQYAQRLGRILRPTEDREPARLYELITDDTMEQYVSKRRRQGVTTNADS
>Mature_469_residues
MRLAFDDGTLLLEDAPNSVPYADWDDRVDEYRARALHYQDLCQWAQGPDGQATLNQASHTDESLHDDARAYRDLDLTPAV
AIEPRDYQQAALAAWTDHDRRGSVVLPTGSGKTFLAVQAIADASVSTLVVVPTIDLLNQWHATLTNAFGDQLPHEIGVLG
GGSHNVTDITVTTYDSAYRYINEYGDQFGLLVVDEVHHLPAPTYQQIPEMTIAPYRLGLTATYERTDGEHNVLEDLIGPV
VYEENVDELAGEYLSEYETIHLKVDLTPEERNQYDDEYQIYRDYLDNHDVDIWKQDGYQEFLKRTSYDPDGRRALIAKQR
AEEIARTAEKKLDTLDNLLKRHYNDRTIIFTANNDFAYDISQEFIVPCITHQTQTDERTEILERFRTGEYSMLVTSQVLD
EGIDVPAANVGIILSGSASKRQYAQRLGRILRPTEDREPARLYELITDDTMEQYVSKRRRQGVTTNADS

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17556358, Length=426, Percent_Identity=27.4647887323944, Blast_Score=122, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6322048, Length=412, Percent_Identity=27.1844660194175, Blast_Score=120, Evalue=4e-28,
Organism=Drosophila melanogaster, GI221331068, Length=416, Percent_Identity=27.6442307692308, Blast_Score=128, Evalue=7e-30,
Organism=Drosophila melanogaster, GI24662247, Length=416, Percent_Identity=27.6442307692308, Blast_Score=128, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53360; Mature: 53360

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLAFDDGTLLLEDAPNSVPYADWDDRVDEYRARALHYQDLCQWAQGPDGQATLNQASHT
CEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
DESLHDDARAYRDLDLTPAVAIEPRDYQQAALAAWTDHDRRGSVVLPTGSGKTFLAVQAI
HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEH
ADASVSTLVVVPTIDLLNQWHATLTNAFGDQLPHEIGVLGGGSHNVTDITVTTYDSAYRY
HCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCEEEEEEEEHHHHHHH
INEYGDQFGLLVVDEVHHLPAPTYQQIPEMTIAPYRLGLTATYERTDGEHNVLEDLIGPV
HHHHCCCCCEEEEECHHCCCCCCHHHCCCCEECCEEECEEEEEECCCCHHHHHHHHHCCC
VYEENVDELAGEYLSEYETIHLKVDLTPEERNQYDDEYQIYRDYLDNHDVDIWKQDGYQE
EECCCHHHHHHHHHHCCEEEEEEEECCHHHHCCCCHHHHHHHHHHCCCCCEEECCCCHHH
FLKRTSYDPDGRRALIAKQRAEEIARTAEKKLDTLDNLLKRHYNDRTIIFTANNDFAYDI
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEC
SQEFIVPCITHQTQTDERTEILERFRTGEYSMLVTSQVLDEGIDVPAANVGIILSGSASK
CHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCCEEEECCCHH
RQYAQRLGRILRPTEDREPARLYELITDDTMEQYVSKRRRQGVTTNADS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRLAFDDGTLLLEDAPNSVPYADWDDRVDEYRARALHYQDLCQWAQGPDGQATLNQASHT
CEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
DESLHDDARAYRDLDLTPAVAIEPRDYQQAALAAWTDHDRRGSVVLPTGSGKTFLAVQAI
HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEH
ADASVSTLVVVPTIDLLNQWHATLTNAFGDQLPHEIGVLGGGSHNVTDITVTTYDSAYRY
HCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCEEEEEEEEHHHHHHH
INEYGDQFGLLVVDEVHHLPAPTYQQIPEMTIAPYRLGLTATYERTDGEHNVLEDLIGPV
HHHHCCCCCEEEEECHHCCCCCCHHHCCCCEECCEEECEEEEEECCCCHHHHHHHHHCCC
VYEENVDELAGEYLSEYETIHLKVDLTPEERNQYDDEYQIYRDYLDNHDVDIWKQDGYQE
EECCCHHHHHHHHHHCCEEEEEEEECCHHHHCCCCHHHHHHHHHHCCCCCEEECCCCHHH
FLKRTSYDPDGRRALIAKQRAEEIARTAEKKLDTLDNLLKRHYNDRTIIFTANNDFAYDI
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEC
SQEFIVPCITHQTQTDERTEILERFRTGEYSMLVTSQVLDEGIDVPAANVGIILSGSASK
CHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCCEEEECCCHH
RQYAQRLGRILRPTEDREPARLYELITDDTMEQYVSKRRRQGVTTNADS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA