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The map label for this gene is gvpJ1

Identifier: 16119996

GI number: 16119996

Start: 17890

End: 18234

Strand: Reverse

Name: gvpJ1

Synonym: VNG6022G

Alternate gene names: 16119996

Gene position: 18234-17890 (Counterclockwise)

Preceding gene: 16119997

Following gene: 16119995

Centisome position: 4.99

GC content: 62.32

Gene sequence:

>345_bases
ATGAGTGACCCCAAACCGACGCGCTCGCAGGGCGACCTCGCCGAGATGCTGGAGATGCTCCTAGACAAAGGAGTCGTCGT
CAACGCGGATATCGCAGTCAGCGTCGGGGACACGGAACTCCTCGGTATCGAGTTACGGGCCGCGATTGCTTCGTTCGAGA
CAGCGGCCGAATACGGGCTCGAGTTCCCAACGGGGACGGATATGGAGCGCGTCGAGTCCGCCGCGAATATCTCACCGGAC
CAGTCCGACCCGGCGTCGGAAACCCAATCGGAGACCGAGTCGACGAACCCACTGTCGGACGATTCGACGCCGACGGCATC
CACGTCAGCGGAGGAGACCAAATGA

Upstream 100 bases:

>100_bases
GGCCAACGGCTTCACCAGAAAACAGCCGGTGGAAACTCGGAGGCATCCGCCCCGTCGGATGAGAGCGCGTCCGGGAGTCC
CACTGAGGACGAGGTGAACG

Downstream 100 bases:

>100_bases
GATGGAACTAGCACTCGACGACGACGCGGACGATTTGCAAGGCGGGCTCACGGCGCTGGTCGTAACTGTCGTCGAATTGC
TGGTCGAGGCCCTCGAACAA

Product: GvpJ protein, cluster A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSDPKPTRSQGDLAEMLEMLLDKGVVVNADIAVSVGDTELLGIELRAAIASFETAAEYGLEFPTGTDMERVESAANISPD
QSDPASETQSETESTNPLSDDSTPTASTSAEETK

Sequences:

>Translated_114_residues
MSDPKPTRSQGDLAEMLEMLLDKGVVVNADIAVSVGDTELLGIELRAAIASFETAAEYGLEFPTGTDMERVESAANISPD
QSDPASETQSETESTNPLSDDSTPTASTSAEETK
>Mature_113_residues
SDPKPTRSQGDLAEMLEMLLDKGVVVNADIAVSVGDTELLGIELRAAIASFETAAEYGLEFPTGTDMERVESAANISPDQ
SDPASETQSETESTNPLSDDSTPTASTSAEETK

Specific function: Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. This protein could be important for the shape determ

COG id: NA

COG function: NA

Gene ontology:

Cell location: Vacuole, gas vesicle (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gas vesicle protein type A family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GVPJ1_HALSA (P24374)

Other databases:

- EMBL:   M58557
- EMBL:   X55648
- EMBL:   AF016485
- EMBL:   AE004438
- PIR:   T08235
- RefSeq:   NP_045963.1
- RefSeq:   NP_395584.1
- GeneID:   1446778
- GeneID:   1449266
- GenomeReviews:   AE004438_GR
- GenomeReviews:   AF016485_GR
- KEGG:   hal:VNG6022G
- HOGENOM:   HBG457034
- ProtClustDB:   CLSK539579
- BioCyc:   HSP64091:GVPJ-MONOMER
- BioCyc:   HSP64091:VNG6022G-MONOMER
- GO:   GO:0005773
- InterPro:   IPR000638
- InterPro:   IPR018493

Pfam domain/function: PF00741 Gas_vesicle

EC number: NA

Molecular weight: Translated: 11983; Mature: 11852

Theoretical pI: Translated: 3.58; Mature: 3.58

Prosite motif: PS00234 GAS_VESICLE_A_1; PS00669 GAS_VESICLE_A_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPKPTRSQGDLAEMLEMLLDKGVVVNADIAVSVGDTELLGIELRAAIASFETAAEYGL
CCCCCCCCCCCCHHHHHHHHHHCCCEECCCEEEECCCCEEHHHHHHHHHHHHHHHHHHCC
EFPTGTDMERVESAANISPDQSDPASETQSETESTNPLSDDSTPTASTSAEETK
CCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDPKPTRSQGDLAEMLEMLLDKGVVVNADIAVSVGDTELLGIELRAAIASFETAAEYGL
CCCCCCCCCCCHHHHHHHHHHCCCEECCCEEEECCCCEEHHHHHHHHHHHHHHHHHHCC
EFPTGTDMERVESAANISPDQSDPASETQSETESTNPLSDDSTPTASTSAEETK
CCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1864501; 1956294; 9847077; 11016950