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Identifier: 16119985

GI number: 16119985

Start: 4614

End: 4811

Strand: Direct

Name: Not Available

Synonym: VNG6009H

Alternate gene names: NA

Gene position: 4614-4811 (Clockwise)

Preceding gene: 16119984

Following gene: 16119989

Centisome position: 1.26

GC content: 42.42

Gene sequence:

>198_bases
ATGGAGAACGAATTAAAGGTCTATCGAGCGAAGCACGACCTAACGCAAGAGGACCTTGCGAAAGAGGTTGGAGTTACTCG
ACAGACCATTAACGCACTTGAAGCAGAGAGATATGACCCATCTCTGGAACTTGCGTTCAAACTCGCAATATATTTCGATT
GTTCGATAGAAGATATTTTTTCCTACGATAGTGATTGA

Upstream 100 bases:

>100_bases
CAGTATCTTCCCGGAAGACAGTGCAACCAGTATCTACGTGTGGATTGGACTGGCATGTTACGGTCTATACTTCGTCTACT
ACAGATACGTGGAGTGAGAC

Downstream 100 bases:

>100_bases
GTCGTTCAGTATGCACATCTACTGATCAACTGATTTAACGCAATTTGGTTGAACAAACGAAGTCTGTTTCCTGCTAGCGG
AAACAAATTTTCCCATTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIFSYDSD

Sequences:

>Translated_65_residues
MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIFSYDSD
>Mature_65_residues
MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIFSYDSD

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 7562; Mature: 7562

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIF
CCCCHHEECCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHC
SYDSD
CCCCC
>Mature Secondary Structure
MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIF
CCCCHHEECCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHC
SYDSD
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]