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The map label for this gene is yjbC

Identifier: 15836397

GI number: 15836397

Start: 980991

End: 981698

Strand: Direct

Name: yjbC

Synonym: CPj0864

Alternate gene names: 15836397

Gene position: 980991-981698 (Clockwise)

Preceding gene: 15836386

Following gene: 15836398

Centisome position: 79.98

GC content: 42.66

Gene sequence:

>708_bases
GTGACAAAAGTTCGTCTTAATAAATTTTTAGCTTCTGCGGGAGTTGCTTCTCGAAGGAAGTGTGATGAAATTATTTTTTC
TGGATCCGTGACTGTGAATGGTCGTGTTGCTGAGGGTCCCTTTGTTCTTGTAGATCCAGAAGATAAAGTACAGGTGGGAG
GAACCTCTGTTCATCTCACTAAGAAAGTATATTTCATGGTGCATAAAGCTATCGGGTATCTGTGTTCTTCTGAGAAGAAG
TTTCCTGGAACTAAGTTGGTGATCGATCTTTTCGCACATCTTCCCTACCGTGTGTTTACTGTGGGACGTTTGGATAAAGA
GACCTCCGGATTAATCTTAGTGACTAATGATGGGGAATTTGCAAATAAAATCATTCACCCCTCCTCAGGAATTACCAAAG
AGTATCTTCTAAAAGTTAGCCGCGATGTCTCTGCAAAAGATTTGGGAAAATTAATGGAGGGGACTTTCATAGACGGCAAA
CATGTGCGTCCTGTCTCTGTGACTAAAATTCGTCGTGGTACAGTAAAGATCGTCGTGAGTGAAGGGAAAAAACACGAGAT
CCGGTTGTTTGCAGATGCTGCAGGACTTCCTATTTTAGAGCTAAAGCGTATCCGTATAGGGAGTTTGGTTTTAGGAGGCT
TGCGTTATGGCGAATATCGCGAGCTTACAGATGCGGAACTCGGGACCTACATGAAATTGTCTGACTAA

Upstream 100 bases:

>100_bases
GTCTAGTAGAAAATATAGAAGTAAAAAAAGTTTTTAAGCAAAGAAAAGTAGACCAGTATTGCCTTGCTTAGGCACAATAG
GTGCTTGATATGGGGTAAAC

Downstream 100 bases:

>100_bases
CTTGTTTTTTTATATACTAACCTGCAATAGATAGAGCCCTATGGGATATGTTTTCTATGTGATCGCTGGCAGTATATTTC
TTGGCATCAGTTTGGGTGCC

Product: pseudouridine synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MTKVRLNKFLASAGVASRRKCDEIIFSGSVTVNGRVAEGPFVLVDPEDKVQVGGTSVHLTKKVYFMVHKAIGYLCSSEKK
FPGTKLVIDLFAHLPYRVFTVGRLDKETSGLILVTNDGEFANKIIHPSSGITKEYLLKVSRDVSAKDLGKLMEGTFIDGK
HVRPVSVTKIRRGTVKIVVSEGKKHEIRLFADAAGLPILELKRIRIGSLVLGGLRYGEYRELTDAELGTYMKLSD

Sequences:

>Translated_235_residues
MTKVRLNKFLASAGVASRRKCDEIIFSGSVTVNGRVAEGPFVLVDPEDKVQVGGTSVHLTKKVYFMVHKAIGYLCSSEKK
FPGTKLVIDLFAHLPYRVFTVGRLDKETSGLILVTNDGEFANKIIHPSSGITKEYLLKVSRDVSAKDLGKLMEGTFIDGK
HVRPVSVTKIRRGTVKIVVSEGKKHEIRLFADAAGLPILELKRIRIGSLVLGGLRYGEYRELTDAELGTYMKLSD
>Mature_234_residues
TKVRLNKFLASAGVASRRKCDEIIFSGSVTVNGRVAEGPFVLVDPEDKVQVGGTSVHLTKKVYFMVHKAIGYLCSSEKKF
PGTKLVIDLFAHLPYRVFTVGRLDKETSGLILVTNDGEFANKIIHPSSGITKEYLLKVSRDVSAKDLGKLMEGTFIDGKH
VRPVSVTKIRRGTVKIVVSEGKKHEIRLFADAAGLPILELKRIRIGSLVLGGLRYGEYRELTDAELGTYMKLSD

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=236, Percent_Identity=33.0508474576271, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788510, Length=231, Percent_Identity=31.1688311688312, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1787524, Length=238, Percent_Identity=32.3529411764706, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 25909; Mature: 25777

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVRLNKFLASAGVASRRKCDEIIFSGSVTVNGRVAEGPFVLVDPEDKVQVGGTSVHLT
CCEEHHHHHHHHCCCHHHHHHHHEEEECCEEECCEECCCCEEEECCCCCEEECCCEEEEH
KKVYFMVHKAIGYLCSSEKKFPGTKLVIDLFAHLPYRVFTVGRLDKETSGLILVTNDGEF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEECCCHH
ANKIIHPSSGITKEYLLKVSRDVSAKDLGKLMEGTFIDGKHVRPVSVTKIRRGTVKIVVS
HHHEECCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEEHHEECCCEEEEEEE
EGKKHEIRLFADAAGLPILELKRIRIGSLVLGGLRYGEYRELTDAELGTYMKLSD
CCCCEEEEEEECCCCCCCEEHHHEEECCEEECCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
TKVRLNKFLASAGVASRRKCDEIIFSGSVTVNGRVAEGPFVLVDPEDKVQVGGTSVHLT
CEEHHHHHHHHCCCHHHHHHHHEEEECCEEECCEECCCCEEEECCCCCEEECCCEEEEH
KKVYFMVHKAIGYLCSSEKKFPGTKLVIDLFAHLPYRVFTVGRLDKETSGLILVTNDGEF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEECCCHH
ANKIIHPSSGITKEYLLKVSRDVSAKDLGKLMEGTFIDGKHVRPVSVTKIRRGTVKIVVS
HHHEECCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEEHHEECCCEEEEEEE
EGKKHEIRLFADAAGLPILELKRIRIGSLVLGGLRYGEYRELTDAELGTYMKLSD
CCCCEEEEEEECCCCCCCEEHHHEEECCEEECCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]