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The map label for this gene is gspD

Identifier: 15836348

GI number: 15836348

Start: 922683

End: 924947

Strand: Direct

Name: gspD

Synonym: CPj0815

Alternate gene names: 15836348

Gene position: 922683-924947 (Clockwise)

Preceding gene: 15836347

Following gene: 15836349

Centisome position: 75.22

GC content: 43.97

Gene sequence:

>2265_bases
ATGGTTTTTTTCCGTAATTCTTTACTGCATTTAGTTGCCCTATCCGGAATGCTCTGTTGTTCTTCTGGAGTGGCTTTAAC
GATAGCCGAGAAGATGGCTTCTTTAGAGCACTCGGGGAGAGGAGCAGACGATTATGAGGGGATGGCTTCGTTTAATGCCA
ATATGAGGGAGTATAGCCTTCAGCTGAGCAAGTTGTATGAGGAAGCACGAAAGCTACGCGCTTCTGGAACTGAGGATGAA
GCTCTGTGGAAGGACTTAATTCGACGGATTGGTGAGGTGCGAGGCTATCTTCGAGAGATCGAGGAGCTTTGGGCTGCAGA
AATTCGTGAGAAAGGGGGCAATCTCGAGGACTACGCCCTCTGGAATCACCCAGAGACTACGATTTACAATCTTGTTACCG
ATTACGGAACCGAAGACTCTATTTATTTGATTCCTCAAGAAATCGGAGCGATTAAAATCGCAACCTTATCGAAATTTGTA
GTTCCTAAAGAGTCTTTCGAAGACTGTCTCACTCAGATCCTATCTCGCTTAGGTATTGGCGTGCGTCAGGTCAATTCTTG
GATTAAGGAACTTTATATGATGCGTAAGGAGGGCTGCAGTGTTGCTGGAGTTTTTTCCTCCAGAAAAGATTTAGAGGCGC
TCCCAGAAACAGCCTATATTGGTTTTGTATTGAATTCGAACGTAGATGCGCATACCAATCAACATGTCTTAAAAAAGTTC
ATTAACCCTGAAACAACGCATGTAGATGTGATTGCAGGACGTGTGTGGATTTTTGGTTCTGCGGGGGAAGTCGGCGAGCT
TCTGAAGATTTATAATTTTGTGCAGTCGGAGAGCATACGTCAAGAGTATCGGGTGATTCCCTTAACTAAGATCGATCCAG
GGGAGATGATTTCCATTCTCAACGCAGCATTTCGTGAGGATCTGACTAAAGATGTTAGTGAAGAATCTTTAGGCCTTCGT
GTAGTTCCTTTACAGTATCAAGGGCGTTCGTTGTTTTTAAGTGCCATCGCGGCGTTAGTGCAGCAAGCGCTGACTCTCAT
TCGAGAGCTTGAAGAAGGGATTGAGAACCCTACGGATAAAACAGTATTTTGGTATAACGTCAAGCACTCCGATCCCCAAG
AGTTGGCGGCATTGCTTTCCCAAGTCCATGATGTCTTCTCTGGCGAGAATAAGGCGAGTGTCGGAGCTGCAGATGGATGT
GGGTCGCAATTAAATGCCTCGATCCAAATTGATACTACAGTAAGTTCTTCTGCGAAAGATGGCTCAGTGAAGTACGGAAA
CTTCATCGCGGATTCTAAGACAGGAACTCTGATTATGGTGGTTGAGAAAGAAGTTCTTCCACGTATTCAGATGCTACTTA
AGAAACTAGATGTCCCTAAAAAGATGGTCCGTATCGAGGTGCTGTTATTTGAAAGAAAATTGGCACATGAGCAGAAATCT
GGGTTAAATCTTCTACGTCTTGGTGAGGAAGTTTGTAAAAAAGGGTGCAGTCCTTCTGTGTCTTGGGCCGGGGGTACTGG
CATACTAGAATTTTTATTTAAAGGAAGTACGGGATCTTCGATAGTTCCTGGTTATGATCTCGCCTATCAATTTTTAATGG
CTCAAGAGGACGTTCGGATTAATGCGAGTCCTTCTGTAGTTACTATGAACCAAACCCCAGCACGGATTGCTGTTGTTGAT
GAAATGTCAATAGCGGTGTCTTCAGATAAAGATAAAGCGCAATACAATCGTGCGCAGTACGGTATCATGATAAAAATGCT
CCCCGTAATTAATGTGGGAGAGGAAGACGGAAAAAGTTACATTACTTTAGAGACAGACATCACCTTTGATACTACGGGAA
AAAATCATGATGATCGTCCTGATGTTACAAGGCGTAATATTACTAATAAGGTGCGCATTGCTGACGGAGAGACTGTGATT
ATTGGAGGTTTGCGTTGCAAACAGATGTCAGATTCTCATGATGGCATTCCTTTCCTTGGAGACATTCCTGGTATAGGGAA
GTTATTTGGAATGAGTTCCACATCAGACAGTCTCACGGAGATGTTTGTATTTATCACTCCGAAGATCCTAGAAAATCCTG
TAGAGCAACAAGAACGTAAAGAAGAAGCTTTACTCTCTTCGCGCCCTGGAGAGAGAGAAGAATACTATCAGGCTTTAGCA
GCTAGTGAGGCTGCAGCACGAGCAGCTCATAAAAAATTAGAGATGTTCCCGGCATCAGGAGTATCTTTATCTCAGGTAGA
GAGGCAAGAATACGATGGCTGCTAG

Upstream 100 bases:

>100_bases
AAAACAAGGATTTGAGCCTGCTGTGGCTTCTCAAGAAGTGTCTTCAAACACACGTAGCGCAGCAGCACATCCAGGGGCGA
CCAATCGTGGGGGATCATAG

Downstream 100 bases:

>100_bases
TATTTTATCTCAGGAGCTTTTGGATATCCTTCCTTATACTTTTTTAAAGAAACACTGTCTTCTCCCTATTGAAGAGAGTA
GTGAGGCTATTACTATAGCC

Product: general secretion protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 754; Mature: 754

Protein sequence:

>754_residues
MVFFRNSLLHLVALSGMLCCSSGVALTIAEKMASLEHSGRGADDYEGMASFNANMREYSLQLSKLYEEARKLRASGTEDE
ALWKDLIRRIGEVRGYLREIEELWAAEIREKGGNLEDYALWNHPETTIYNLVTDYGTEDSIYLIPQEIGAIKIATLSKFV
VPKESFEDCLTQILSRLGIGVRQVNSWIKELYMMRKEGCSVAGVFSSRKDLEALPETAYIGFVLNSNVDAHTNQHVLKKF
INPETTHVDVIAGRVWIFGSAGEVGELLKIYNFVQSESIRQEYRVIPLTKIDPGEMISILNAAFREDLTKDVSEESLGLR
VVPLQYQGRSLFLSAIAALVQQALTLIRELEEGIENPTDKTVFWYNVKHSDPQELAALLSQVHDVFSGENKASVGAADGC
GSQLNASIQIDTTVSSSAKDGSVKYGNFIADSKTGTLIMVVEKEVLPRIQMLLKKLDVPKKMVRIEVLLFERKLAHEQKS
GLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVD
EMSIAVSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGETVI
IGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQERKEEALLSSRPGEREEYYQALA
ASEAAARAAHKKLEMFPASGVSLSQVERQEYDGC

Sequences:

>Translated_754_residues
MVFFRNSLLHLVALSGMLCCSSGVALTIAEKMASLEHSGRGADDYEGMASFNANMREYSLQLSKLYEEARKLRASGTEDE
ALWKDLIRRIGEVRGYLREIEELWAAEIREKGGNLEDYALWNHPETTIYNLVTDYGTEDSIYLIPQEIGAIKIATLSKFV
VPKESFEDCLTQILSRLGIGVRQVNSWIKELYMMRKEGCSVAGVFSSRKDLEALPETAYIGFVLNSNVDAHTNQHVLKKF
INPETTHVDVIAGRVWIFGSAGEVGELLKIYNFVQSESIRQEYRVIPLTKIDPGEMISILNAAFREDLTKDVSEESLGLR
VVPLQYQGRSLFLSAIAALVQQALTLIRELEEGIENPTDKTVFWYNVKHSDPQELAALLSQVHDVFSGENKASVGAADGC
GSQLNASIQIDTTVSSSAKDGSVKYGNFIADSKTGTLIMVVEKEVLPRIQMLLKKLDVPKKMVRIEVLLFERKLAHEQKS
GLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVD
EMSIAVSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGETVI
IGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQERKEEALLSSRPGEREEYYQALA
ASEAAARAAHKKLEMFPASGVSLSQVERQEYDGC
>Mature_754_residues
MVFFRNSLLHLVALSGMLCCSSGVALTIAEKMASLEHSGRGADDYEGMASFNANMREYSLQLSKLYEEARKLRASGTEDE
ALWKDLIRRIGEVRGYLREIEELWAAEIREKGGNLEDYALWNHPETTIYNLVTDYGTEDSIYLIPQEIGAIKIATLSKFV
VPKESFEDCLTQILSRLGIGVRQVNSWIKELYMMRKEGCSVAGVFSSRKDLEALPETAYIGFVLNSNVDAHTNQHVLKKF
INPETTHVDVIAGRVWIFGSAGEVGELLKIYNFVQSESIRQEYRVIPLTKIDPGEMISILNAAFREDLTKDVSEESLGLR
VVPLQYQGRSLFLSAIAALVQQALTLIRELEEGIENPTDKTVFWYNVKHSDPQELAALLSQVHDVFSGENKASVGAADGC
GSQLNASIQIDTTVSSSAKDGSVKYGNFIADSKTGTLIMVVEKEVLPRIQMLLKKLDVPKKMVRIEVLLFERKLAHEQKS
GLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVD
EMSIAVSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGETVI
IGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQERKEEALLSSRPGEREEYYQALA
ASEAAARAAHKKLEMFPASGVSLSQVERQEYDGC

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=489, Percent_Identity=21.6768916155419, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI1789793, Length=288, Percent_Identity=23.9583333333333, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 83548; Mature: 83548

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFFRNSLLHLVALSGMLCCSSGVALTIAEKMASLEHSGRGADDYEGMASFNANMREYSL
CEEEHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHH
QLSKLYEEARKLRASGTEDEALWKDLIRRIGEVRGYLREIEELWAAEIREKGGNLEDYAL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
WNHPETTIYNLVTDYGTEDSIYLIPQEIGAIKIATLSKFVVPKESFEDCLTQILSRLGIG
CCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCC
VRQVNSWIKELYMMRKEGCSVAGVFSSRKDLEALPETAYIGFVLNSNVDAHTNQHVLKKF
HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHH
INPETTHVDVIAGRVWIFGSAGEVGELLKIYNFVQSESIRQEYRVIPLTKIDPGEMISIL
CCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHH
NAAFREDLTKDVSEESLGLRVVPLQYQGRSLFLSAIAALVQQALTLIRELEEGIENPTDK
HHHHHHHHHHHCHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TVFWYNVKHSDPQELAALLSQVHDVFSGENKASVGAADGCGSQLNASIQIDTTVSSSAKD
EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
GSVKYGNFIADSKTGTLIMVVEKEVLPRIQMLLKKLDVPKKMVRIEVLLFERKLAHEQKS
CCEEECCEEECCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
GLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGSSIVPGYDLAYQFLMAQEDVRI
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEE
NASPSVVTMNQTPARIAVVDEMSIAVSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSY
CCCCCEEEECCCCCEEEEEECEEEEECCCCHHHHHHHHHHCEEEEEECCEECCCCCCCEE
ITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLG
EEEEECEEEECCCCCCCCCCCHHHHCCCCEEEEECCCEEEEECEEECCCCCCCCCCCCCC
DIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQERKEEALLSSRPGEREEYYQALA
CCCCCHHHHCCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ASEAAARAAHKKLEMFPASGVSLSQVERQEYDGC
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MVFFRNSLLHLVALSGMLCCSSGVALTIAEKMASLEHSGRGADDYEGMASFNANMREYSL
CEEEHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHH
QLSKLYEEARKLRASGTEDEALWKDLIRRIGEVRGYLREIEELWAAEIREKGGNLEDYAL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
WNHPETTIYNLVTDYGTEDSIYLIPQEIGAIKIATLSKFVVPKESFEDCLTQILSRLGIG
CCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCC
VRQVNSWIKELYMMRKEGCSVAGVFSSRKDLEALPETAYIGFVLNSNVDAHTNQHVLKKF
HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHH
INPETTHVDVIAGRVWIFGSAGEVGELLKIYNFVQSESIRQEYRVIPLTKIDPGEMISIL
CCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHH
NAAFREDLTKDVSEESLGLRVVPLQYQGRSLFLSAIAALVQQALTLIRELEEGIENPTDK
HHHHHHHHHHHCHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TVFWYNVKHSDPQELAALLSQVHDVFSGENKASVGAADGCGSQLNASIQIDTTVSSSAKD
EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
GSVKYGNFIADSKTGTLIMVVEKEVLPRIQMLLKKLDVPKKMVRIEVLLFERKLAHEQKS
CCEEECCEEECCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
GLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGSSIVPGYDLAYQFLMAQEDVRI
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEE
NASPSVVTMNQTPARIAVVDEMSIAVSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSY
CCCCCEEEECCCCCEEEEEECEEEEECCCCHHHHHHHHHHCEEEEEECCEECCCCCCCEE
ITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLG
EEEEECEEEECCCCCCCCCCCHHHHCCCCEEEEECCCEEEEECEEECCCCCCCCCCCCCC
DIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQERKEEALLSSRPGEREEYYQALA
CCCCCHHHHCCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ASEAAARAAHKKLEMFPASGVSLSQVERQEYDGC
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1640836 [H]