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The map label for this gene is yebC

Identifier: 15836104

GI number: 15836104

Start: 664009

End: 664725

Strand: Reverse

Name: yebC

Synonym: CPj0573

Alternate gene names: 15836104

Gene position: 664725-664009 (Counterclockwise)

Preceding gene: 15836105

Following gene: 15836102

Centisome position: 54.19

GC content: 41.14

Gene sequence:

>717_bases
ATGGCAGGGCATAGTAAGTGGGCCAATACGAAACATCGCAAGGAAAGAGCAGATCATAAAAAAGGCAAGATTTTTTCTCG
TATTATTAAAGAGTTGATTTCAGCTGTTAAATTAGGGGGAGCTGACCCTAAGTCCAATGCGCGATTACGTATGGTGATAC
AGAAAGCTAAGGAAAATAATATCCCTAATGAGAATATCGAAAGGAATTTGAAGAAAGCAACTTCTGCAGAGCAAAAGAAC
TTTGAAGAGGTTACCTATGAGCTGTATGGTCATGGGGGAGTGGGAATTATTGTGGAAGCAATGACGGATAACAAGAACCG
TACGGCTTCTGATATGCGCATTGCTATAAATAAACGTGGAGGTTCTCTTGTAGAACCTGGAAGCGTACTTTATAATTTTG
CAAGGAAAGGGGCGTGTACTGTCGCTAAGAGCTCTATAGATGAAGAAGTAATATTTTCTTATGCTATAGAAGCAGGAGCT
GAGGATCTCGATACCGAAGATGAAGAAAACTTCTTAGTGATCTGTGCTCCAAGTGAACTTGCCTCCGTTAAAGAGAAACT
TATCAGTCAGGGTGCGACTTGTAGTGAAGACAGGTTGATTTATCTTCCCTTGCGTCTAGTAGATTGTGATGAGAAAGATG
GCGAGGCAAACTTAGCTCTTATTGATTGGCTAGAGCAAATCGAAGATGTGGATGACGTCTACCACAACATGTCCTAA

Upstream 100 bases:

>100_bases
GAATACGAACAACGTTTCCCCTTGTATGATCGTGCTGTTGCTTGGGAAAAGGCAAACGCTTATTTATTGCGAGGGTATAA
AAAAAGAGTAGGTGGAGGAT

Downstream 100 bases:

>100_bases
GTTTCAGGACCTCGTATTTTAGCTATTCACTTCTACGGACTTGCCTTTCTCAACTAGATTACGAAGAGCTATTTTCTTCG
TGGACTTGTTGGGGAAGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MAGHSKWANTKHRKERADHKKGKIFSRIIKELISAVKLGGADPKSNARLRMVIQKAKENNIPNENIERNLKKATSAEQKN
FEEVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAINKRGGSLVEPGSVLYNFARKGACTVAKSSIDEEVIFSYAIEAGA
EDLDTEDEENFLVICAPSELASVKEKLISQGATCSEDRLIYLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHNMS

Sequences:

>Translated_238_residues
MAGHSKWANTKHRKERADHKKGKIFSRIIKELISAVKLGGADPKSNARLRMVIQKAKENNIPNENIERNLKKATSAEQKN
FEEVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAINKRGGSLVEPGSVLYNFARKGACTVAKSSIDEEVIFSYAIEAGA
EDLDTEDEENFLVICAPSELASVKEKLISQGATCSEDRLIYLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHNMS
>Mature_237_residues
AGHSKWANTKHRKERADHKKGKIFSRIIKELISAVKLGGADPKSNARLRMVIQKAKENNIPNENIERNLKKATSAEQKNF
EEVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAINKRGGSLVEPGSVLYNFARKGACTVAKSSIDEEVIFSYAIEAGAE
DLDTEDEENFLVICAPSELASVKEKLISQGATCSEDRLIYLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHNMS

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=248, Percent_Identity=33.8709677419355, Blast_Score=117, Evalue=7e-27,
Organism=Escherichia coli, GI1788171, Length=237, Percent_Identity=42.1940928270042, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1788294, Length=235, Percent_Identity=33.1914893617021, Blast_Score=118, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17556100, Length=244, Percent_Identity=25.4098360655738, Blast_Score=77, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6321458, Length=193, Percent_Identity=35.7512953367876, Blast_Score=99, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24583305, Length=246, Percent_Identity=28.8617886178862, Blast_Score=97, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y573_CHLPN (Q9Z7Y0)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   A86562
- PIR:   C72061
- RefSeq:   NP_224769.1
- RefSeq:   NP_300628.1
- RefSeq:   NP_444727.1
- RefSeq:   NP_876867.1
- ProteinModelPortal:   Q9Z7Y0
- SMR:   Q9Z7Y0
- GeneID:   1467274
- GeneID:   895275
- GeneID:   919318
- GeneID:   963732
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0176
- KEGG:   cpj:CPj0573
- KEGG:   cpn:CPn0573
- KEGG:   cpt:CpB0595
- TIGR:   CP_0176
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- PhylomeDB:   Q9Z7Y0
- ProtClustDB:   PRK00110
- BioCyc:   CPNE115711:CP_0176-MONOMER
- BioCyc:   CPNE115713:CPN0573-MONOMER
- BioCyc:   CPNE138677:CPJ0573-MONOMER
- BioCyc:   CPNE182082:CPB0595-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26472; Mature: 26341

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANTKHRKERADHKKGKIFSRIIKELISAVKLGGADPKSNARLRMVIQKAKENN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
IPNENIERNLKKATSAEQKNFEEVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAINKRG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEEECCC
GSLVEPGSVLYNFARKGACTVAKSSIDEEVIFSYAIEAGAEDLDTEDEENFLVICAPSEL
CCCCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHH
ASVKEKLISQGATCSEDRLIYLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHNMS
HHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AGHSKWANTKHRKERADHKKGKIFSRIIKELISAVKLGGADPKSNARLRMVIQKAKENN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
IPNENIERNLKKATSAEQKNFEEVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAINKRG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEEECCC
GSLVEPGSVLYNFARKGACTVAKSSIDEEVIFSYAIEAGAEDLDTEDEENFLVICAPSEL
CCCCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHH
ASVKEKLISQGATCSEDRLIYLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHNMS
HHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362