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The map label for this gene is pmp_12

Identifier: 15835984

GI number: 15835984

Start: 510637

End: 512181

Strand: Direct

Name: pmp_12

Synonym: CPj0451

Alternate gene names: 15835984

Gene position: 510637-512181 (Clockwise)

Preceding gene: 15835983

Following gene: 15835985

Centisome position: 41.63

GC content: 43.88

Gene sequence:

>1545_bases
ATGACCATACTTCGAAATTTTCTTACCTGCTCGGCTTTATTCCTCGCTCTCCCTGCAGCAGCACAAGTTGTATATCTTCA
TGAAAGTGATGGTTATAACGGTGCTATCAATAATAAAAGCTTAGAACCTAAAATTACCTGTTATCCAGAAGGAACTTCTT
ACATCTTTCTAGATGACGTGAGGATTTCCAACGTTAAGCATGATCAAGAAGATGCTGGGGTTTTTATAAATCGATCTGGG
AATCTTTTTTTCATGGGCAACCGTTGCAACTTCACTTTTCACAACCTTATGACCGAGGGTTTTGGCGCTGCCATTTCGAA
CCGCGTTGGAGACACCACTCTCACTCTCTCTAATTTTTCTTACTTAGCGTTCACCTCAGCACCTCTACTACCTCAAGGAC
AAGGAGCGATTTATAGTCTTGGTTCCGTGATGATCGAAAATAGTGAGGAAGTGACTTTCTGTGGGAACTACTCTTCGTGG
AGTGGAGCTGCGATTTATACTCCCTACCTTTTAGGTTCTAAGGCGAGTCGTCCTTCAGTAAATCTCAGCGGGAACCGCTA
CCTGGTGTTTAGAGACAATGTGAGCCAAGGTTATGGCGGCGCCATATCTACCCACAATCTCACACTCACGACTCGAGGAC
CTTCGTGTTTTGAAAATAATCATGCTTATCATGACGTGAATAGTAATGGAGGAGCCATTGCCATTGCTCCTGGAGGATCG
ATCTCTATATCCGTGAAAAGCGGAGATCTCATCTTCAAAGGAAATACAGCATCACAAGACGGAAATACAATACACAACTC
CATCCATCTGCAATCTGGAGCACAGTTTAAGAACCTACGTGCTGTTTCAGAATCCGGAGTTTATTTCTATGATCCTATAA
GCCATAGCGAGTCGCATAAAATTACAGATCTTGTAATCAATGCTCCTGAAGGAAAGGAAACTTATGAAGGAACAATTAGC
TTCTCAGGACTATGCCTGGATGATCATGAAGTTTGTGCGGAAAATCTTACTTCCACAATCCTACAAGATGTCACATTAGC
AGGAGGAACTCTCTCTCTATCGGATGGGGTTACCTTGCAACTGCATTCTTTTAAGCAGGAAGCAAGCTCTACGCTTACTA
TGTCTCCAGGAACCACTCTGCTCTGCTCAGGAGATGCTCGGGTTCAGAATCTGCACATCCTGATTGAAGATACCGACAAC
TTTGTTCCTGTAAGGATTCGCGCCGAGGACAAGGATGCTCTTGTCTCATTAGAAAAACTTAAAGTTGCCTTTGAGGCTTA
TTGGTCCGTCTATGACTTTCCTCAATTTAAGGAAGCCTTTACGATTCCTCTTCTTGAACTTCTAGGGCCTTCTTTTGACA
GTCTTCTCCTAGGGGAGACCACTTTGGAGAGAACCCAAGTCACAACAGAGAATGACGCCGTTCGAGGTTTCTGGTCCCTA
AGCTGGGAAGAGTACCCCCCTTCTCTGGATAAAGACAGAAGGATCACACCAACTAAGAAAACTGTTTTCCTCACTTGGAA
TCCTGAGATCACTTCTACGCCATAA

Upstream 100 bases:

>100_bases
AAACAGTTAAATAATTAATAGACAATAATCTATTCTTATTGACTTCTTTTTTTCTTGTTTATTAAAGTTGCTTCAACCTT
ATTGATTTAACGAGGAAACC

Downstream 100 bases:

>100_bases
TCTCTAAGTCTACACTATAATTAAGGGAATCCCCTTTAAGAAGATTTTGGGACCTATCTGTATTCAGAGATAGGTCCCTC
TATGCACACATGTTCACGAG

Product: hypothetical protein

Products: NA

Alternate protein names: Outer membrane protein 13; Polymorphic membrane protein 12

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MTILRNFLTCSALFLALPAAAQVVYLHESDGYNGAINNKSLEPKITCYPEGTSYIFLDDVRISNVKHDQEDAGVFINRSG
NLFFMGNRCNFTFHNLMTEGFGAAISNRVGDTTLTLSNFSYLAFTSAPLLPQGQGAIYSLGSVMIENSEEVTFCGNYSSW
SGAAIYTPYLLGSKASRPSVNLSGNRYLVFRDNVSQGYGGAISTHNLTLTTRGPSCFENNHAYHDVNSNGGAIAIAPGGS
ISISVKSGDLIFKGNTASQDGNTIHNSIHLQSGAQFKNLRAVSESGVYFYDPISHSESHKITDLVINAPEGKETYEGTIS
FSGLCLDDHEVCAENLTSTILQDVTLAGGTLSLSDGVTLQLHSFKQEASSTLTMSPGTTLLCSGDARVQNLHILIEDTDN
FVPVRIRAEDKDALVSLEKLKVAFEAYWSVYDFPQFKEAFTIPLLELLGPSFDSLLLGETTLERTQVTTENDAVRGFWSL
SWEEYPPSLDKDRRITPTKKTVFLTWNPEITSTP

Sequences:

>Translated_514_residues
MTILRNFLTCSALFLALPAAAQVVYLHESDGYNGAINNKSLEPKITCYPEGTSYIFLDDVRISNVKHDQEDAGVFINRSG
NLFFMGNRCNFTFHNLMTEGFGAAISNRVGDTTLTLSNFSYLAFTSAPLLPQGQGAIYSLGSVMIENSEEVTFCGNYSSW
SGAAIYTPYLLGSKASRPSVNLSGNRYLVFRDNVSQGYGGAISTHNLTLTTRGPSCFENNHAYHDVNSNGGAIAIAPGGS
ISISVKSGDLIFKGNTASQDGNTIHNSIHLQSGAQFKNLRAVSESGVYFYDPISHSESHKITDLVINAPEGKETYEGTIS
FSGLCLDDHEVCAENLTSTILQDVTLAGGTLSLSDGVTLQLHSFKQEASSTLTMSPGTTLLCSGDARVQNLHILIEDTDN
FVPVRIRAEDKDALVSLEKLKVAFEAYWSVYDFPQFKEAFTIPLLELLGPSFDSLLLGETTLERTQVTTENDAVRGFWSL
SWEEYPPSLDKDRRITPTKKTVFLTWNPEITSTP
>Mature_513_residues
TILRNFLTCSALFLALPAAAQVVYLHESDGYNGAINNKSLEPKITCYPEGTSYIFLDDVRISNVKHDQEDAGVFINRSGN
LFFMGNRCNFTFHNLMTEGFGAAISNRVGDTTLTLSNFSYLAFTSAPLLPQGQGAIYSLGSVMIENSEEVTFCGNYSSWS
GAAIYTPYLLGSKASRPSVNLSGNRYLVFRDNVSQGYGGAISTHNLTLTTRGPSCFENNHAYHDVNSNGGAIAIAPGGSI
SISVKSGDLIFKGNTASQDGNTIHNSIHLQSGAQFKNLRAVSESGVYFYDPISHSESHKITDLVINAPEGKETYEGTISF
SGLCLDDHEVCAENLTSTILQDVTLAGGTLSLSDGVTLQLHSFKQEASSTLTMSPGTTLLCSGDARVQNLHILIEDTDNF
VPVRIRAEDKDALVSLEKLKVAFEAYWSVYDFPQFKEAFTIPLLELLGPSFDSLLLGETTLERTQVTTENDAVRGFWSLS
WEEYPPSLDKDRRITPTKKTVFLTWNPEITSTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PMP outer membrane protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PMP12_CHLPN (Q9Z3D6)

Other databases:

- EMBL:   AJ133034
- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   A86547
- PIR:   E72076
- RefSeq:   NP_224650.1
- RefSeq:   NP_300508.1
- RefSeq:   NP_444850.1
- RefSeq:   NP_876743.1
- GeneID:   1467150
- GeneID:   895086
- GeneID:   919181
- GeneID:   962885
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0301
- KEGG:   cpn:CPn0452
- KEGG:   cpt:CpB0469
- TIGR:   CP_0301
- OMA:   ISHSESH
- ProtClustDB:   CLSK337244
- BioCyc:   CPNE115711:CP_0301-MONOMER
- BioCyc:   CPNE115713:CPN0452-MONOMER
- BioCyc:   CPNE138677:CPJ0451-MONOMER
- BioCyc:   CPNE182082:CPB0469-MONOMER
- InterPro:   IPR003368
- InterPro:   IPR011050
- InterPro:   IPR011427
- TIGRFAMs:   TIGR01376

Pfam domain/function: PF07548 ChlamPMP_M; SSF51126 Pectin_lyas_like

EC number: NA

Molecular weight: Translated: 56096; Mature: 55965

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILRNFLTCSALFLALPAAAQVVYLHESDGYNGAINNKSLEPKITCYPEGTSYIFLDDV
CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEECE
RISNVKHDQEDAGVFINRSGNLFFMGNRCNFTFHNLMTEGFGAAISNRVGDTTLTLSNFS
EECCCCCCCCCCCEEEECCCCEEEEECCCCEEHHHHHHHCCCHHHHCCCCCEEEEECCCE
YLAFTSAPLLPQGQGAIYSLGSVMIENSEEVTFCGNYSSWSGAAIYTPYLLGSKASRPSV
EEEEECCCCCCCCCCCEEEECEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCCCEE
NLSGNRYLVFRDNVSQGYGGAISTHNLTLTTRGPSCFENNHAYHDVNSNGGAIAIAPGGS
EECCCEEEEEECCCCCCCCCEEEECEEEEEECCCCHHCCCCEEEEECCCCCEEEEECCCE
ISISVKSGDLIFKGNTASQDGNTIHNSIHLQSGAQFKNLRAVSESGVYFYDPISHSESHK
EEEEEECCCEEEECCCCCCCCCEEEEEEEECCCCCCHHEEEHHCCCEEEECCCCCCCCCE
ITDLVINAPEGKETYEGTISFSGLCLDDHEVCAENLTSTILQDVTLAGGTLSLSDGVTLQ
EEEEEEECCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHEECCCEEEECCCCEEE
LHSFKQEASSTLTMSPGTTLLCSGDARVQNLHILIEDTDNFVPVRIRAEDKDALVSLEKL
EECHHHHHCCEEEECCCCEEEECCCCEEEEEEEEEECCCCEEEEEEEECCHHHHEEHHHH
KVAFEAYWSVYDFPQFKEAFTIPLLELLGPSFDSLLLGETTLERTQVTTENDAVRGFWSL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHEEEECCCCCEEEEEEC
SWEEYPPSLDKDRRITPTKKTVFLTWNPEITSTP
CHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
>Mature Secondary Structure 
TILRNFLTCSALFLALPAAAQVVYLHESDGYNGAINNKSLEPKITCYPEGTSYIFLDDV
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEECE
RISNVKHDQEDAGVFINRSGNLFFMGNRCNFTFHNLMTEGFGAAISNRVGDTTLTLSNFS
EECCCCCCCCCCCEEEECCCCEEEEECCCCEEHHHHHHHCCCHHHHCCCCCEEEEECCCE
YLAFTSAPLLPQGQGAIYSLGSVMIENSEEVTFCGNYSSWSGAAIYTPYLLGSKASRPSV
EEEEECCCCCCCCCCCEEEECEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCCCEE
NLSGNRYLVFRDNVSQGYGGAISTHNLTLTTRGPSCFENNHAYHDVNSNGGAIAIAPGGS
EECCCEEEEEECCCCCCCCCEEEECEEEEEECCCCHHCCCCEEEEECCCCCEEEEECCCE
ISISVKSGDLIFKGNTASQDGNTIHNSIHLQSGAQFKNLRAVSESGVYFYDPISHSESHK
EEEEEECCCEEEECCCCCCCCCEEEEEEEECCCCCCHHEEEHHCCCEEEECCCCCCCCCE
ITDLVINAPEGKETYEGTISFSGLCLDDHEVCAENLTSTILQDVTLAGGTLSLSDGVTLQ
EEEEEEECCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHEECCCEEEECCCCEEE
LHSFKQEASSTLTMSPGTTLLCSGDARVQNLHILIEDTDNFVPVRIRAEDKDALVSLEKL
EECHHHHHCCEEEECCCCEEEECCCCEEEEEEEEEECCCCEEEEEEEECCHHHHEEHHHH
KVAFEAYWSVYDFPQFKEAFTIPLLELLGPSFDSLLLGETTLERTQVTTENDAVRGFWSL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHEEEECCCCCEEEEEEC
SWEEYPPSLDKDRRITPTKKTVFLTWNPEITSTP
CHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10539856; 10192388; 10684935; 10871362