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The map label for this gene is atpD

Identifier: 15835625

GI number: 15835625

Start: 109125

End: 109754

Strand: Direct

Name: atpD

Synonym: CPj0090

Alternate gene names: 15835625

Gene position: 109125-109754 (Clockwise)

Preceding gene: 15835624

Following gene: 15835626

Centisome position: 8.9

GC content: 39.68

Gene sequence:

>630_bases
ATGTCTGTCCAAGTAAAGCTAACAAAGAACTCCTTTCGACTAGAAAAACAAAAACTAGCACGATTACAAACGTACCTTCC
GACATTAAAACTTAAGAAAGCTTTATTGCAGGCTGAGGTACAAAACGCTGTTAAAGATGCTGCAGAGTGTGACAAGGACT
ATGTACAGGCTTATGAGCGGATTTATGCTTTTGCGGAATTGTTTAGTATTCCTCTCTGTACAGATTGTGTAGAGAAGAGT
TTTGAGATTCAGAGTATAGATAACGACTTTGAAAACATAGCTGGTGTTGAGGTCCCTATAGTCCGTGAGGTAACACTATT
TCCAGCTTCGTATTCTCTTTTAGGGACCCCGATATGGTTAGATACGATGCTCTCAGCATCAAAAGAACTTGTGGTCAAAA
AAGTCATGGCCGAAGTCTCGAAAGAACGTCTAAAGATCTTAGAAGAAGAATTACGAGCCGTTTCAATTCGAGTCAATTTA
TTTGAGAAGAAGCTCATTCCTGAAACTACGAAGATACTCAAGAAGATTGCGGTTTTCTTAAGTGATCGTAGCATCACCGA
TGTAGGTCAAGTTAAAATGGCAAAAAAGAAGATAGAACTCCGGAAAGCAAGGGGGGATGAGTGCGTTTAA

Upstream 100 bases:

>100_bases
AAGAAGCTTTAGATATTGGTTGGAAAATTCTAGCTCAAAGTTTCACTTCTGAAGAAGTGGGAATTAAAGCCCAGTTAATA
AATAAGTATTGGCCAAAAGC

Downstream 100 bases:

>100_bases
ATATACATAAGTATCTCTTTATAGGACGCAATAAGGCGGATTTTTTTTCTGCAAGTAGAGAGCTTGGTGTTGTAGAGTTT
ATTTCTAAAAAGTGTTTCAT

Product: V-type ATP synthase subunit D

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit D

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSVQVKLTKNSFRLEKQKLARLQTYLPTLKLKKALLQAEVQNAVKDAAECDKDYVQAYERIYAFAELFSIPLCTDCVEKS
FEIQSIDNDFENIAGVEVPIVREVTLFPASYSLLGTPIWLDTMLSASKELVVKKVMAEVSKERLKILEEELRAVSIRVNL
FEKKLIPETTKILKKIAVFLSDRSITDVGQVKMAKKKIELRKARGDECV

Sequences:

>Translated_209_residues
MSVQVKLTKNSFRLEKQKLARLQTYLPTLKLKKALLQAEVQNAVKDAAECDKDYVQAYERIYAFAELFSIPLCTDCVEKS
FEIQSIDNDFENIAGVEVPIVREVTLFPASYSLLGTPIWLDTMLSASKELVVKKVMAEVSKERLKILEEELRAVSIRVNL
FEKKLIPETTKILKKIAVFLSDRSITDVGQVKMAKKKIELRKARGDECV
>Mature_208_residues
SVQVKLTKNSFRLEKQKLARLQTYLPTLKLKKALLQAEVQNAVKDAAECDKDYVQAYERIYAFAELFSIPLCTDCVEKSF
EIQSIDNDFENIAGVEVPIVREVTLFPASYSLLGTPIWLDTMLSASKELVVKKVMAEVSKERLKILEEELRAVSIRVNLF
EKKLIPETTKILKKIAVFLSDRSITDVGQVKMAKKKIELRKARGDECV

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VATD_CHLPN (Q9Z991)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   B86502
- PIR:   D72121
- RefSeq:   NP_224298.1
- RefSeq:   NP_300149.1
- RefSeq:   NP_445226.1
- RefSeq:   NP_876366.2
- GeneID:   1466773
- GeneID:   895695
- GeneID:   918882
- GeneID:   963216
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0684
- KEGG:   cpn:CPn0090
- KEGG:   cpt:CpB0090
- TIGR:   CP_0684
- HOGENOM:   HBG352980
- OMA:   LFEKVMI
- ProtClustDB:   PRK02195
- BioCyc:   CPNE115711:CP_0684-MONOMER
- BioCyc:   CPNE115713:CPN0090-MONOMER
- BioCyc:   CPNE138677:CPJ0090-MONOMER
- BioCyc:   CPNE182082:CPB0090-MONOMER
- BRENDA:   3.6.3.14
- HAMAP:   MF_00271
- InterPro:   IPR002699
- TIGRFAMs:   TIGR00309

Pfam domain/function: PF01813 ATP-synt_D

EC number: 3.6.3.14

Molecular weight: Translated: 23788; Mature: 23657

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVQVKLTKNSFRLEKQKLARLQTYLPTLKLKKALLQAEVQNAVKDAAECDKDYVQAYER
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IYAFAELFSIPLCTDCVEKSFEIQSIDNDFENIAGVEVPIVREVTLFPASYSLLGTPIWL
HHHHHHHHHCCHHHHHHHCCCCHHHHCCHHHHHCCCCCCHHHHEEECCCCHHHHCCHHHH
DTMLSASKELVVKKVMAEVSKERLKILEEELRAVSIRVNLFEKKLIPETTKILKKIAVFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SDRSITDVGQVKMAKKKIELRKARGDECV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SVQVKLTKNSFRLEKQKLARLQTYLPTLKLKKALLQAEVQNAVKDAAECDKDYVQAYER
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IYAFAELFSIPLCTDCVEKSFEIQSIDNDFENIAGVEVPIVREVTLFPASYSLLGTPIWL
HHHHHHHHHCCHHHHHHHCCCCHHHHCCHHHHHCCCCCCHHHHEEECCCCHHHHCCHHHH
DTMLSASKELVVKKVMAEVSKERLKILEEELRAVSIRVNLFEKKLIPETTKILKKIAVFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SDRSITDVGQVKMAKKKIELRKARGDECV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362