Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16752229

GI number: 16752229

Start: 1152542

End: 1153237

Strand: Direct

Name: Not Available

Synonym: CP1060

Alternate gene names: NA

Gene position: 1152542-1153237 (Clockwise)

Preceding gene: 16752217

Following gene: 16752230

Centisome position: 93.71

GC content: 40.8

Gene sequence:

>696_bases
ATGAGCAAGCCCTCTCCTCGTAATGCCAATCAACCTCAAAAACCTTCAGCCTCTTTCAATAAAAAAACGCGAAGCCGTCT
AGCAGAGCTGGCTGCTCAAAAGAAAGCAAAGGCTGATGACTTAGAACAAGTCCATCCCGTACCTACGGAAGAAGAAATTA
AAAAAGCTTTAGGCAATATCTTCGAAGGTCTTAGCAATGGACTAGACCTACAACAGATTCTAGGTCTCTCGGACTATCTC
TTAGAGGAGATCTATACTGTAGCTTATACATTCTATTCTCAAGGGAAGTACAACGAAGCTGTAGGACTCTTCCAGTTATT
GGCAGCAGCACAACCTCAGAACTACAAGTATATGTTAGGGTTAAGCTCCTGCTACCACCAATTGCATTTATATAATGAAG
CGGCTTTTGGATTTTTCCTTGCTTTCGATGCTCAACCTGACAACCCAATTCCTCCTTACTACATTGCTGATAGCTTATTG
AAGCTACAGCAACCCGAAGAATCTAACAATTTCTTAGACGTCACCATGGATATCTGTGGGAATAACCCAGAATTCAAAAT
CTTAAAAGAACGTTGCCAAATTATGAAACAGTCTATTGAGAAGCAGATGGCTGGAGAAACTAAGAAAGCACCGACAAAAA
AACCTGCGGGAAAAAGCAAAACAACTACAAATAAGAAAAGCGGAAAGAAACGTTAG

Upstream 100 bases:

>100_bases
ATAATAAAAATATTATTATCAATAGGCTTGTTTTTAGAAAAAGATTAATTTTAAAATTGATTCATAAATACAAAATAATT
TTATTTTAGGAATTAGATCG

Downstream 100 bases:

>100_bases
TAAGATTCTAAGGAGAAATCATGAATAAAAAGCCCAAGAAAACAAAAAAGGCAGTTCAGTCTAAGGCAGCTCCTGTAAAG
CGCGTACCAGAAGAATCTCA

Product: type III secretion chaperone SycD

Products: NA

Alternate protein names: Type III Secretion Chaperone SycD; Low Calcium Response Protein H; LcrH/SycD Chaperone Family Protein; Type III Secretion Chaperone Low Calcium Response Protein H; Type III Secretion Chaperone SycD/LcrH

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSKPSPRNANQPQKPSASFNKKTRSRLAELAAQKKAKADDLEQVHPVPTEEEIKKALGNIFEGLSNGLDLQQILGLSDYL
LEEIYTVAYTFYSQGKYNEAVGLFQLLAAAQPQNYKYMLGLSSCYHQLHLYNEAAFGFFLAFDAQPDNPIPPYYIADSLL
KLQQPEESNNFLDVTMDICGNNPEFKILKERCQIMKQSIEKQMAGETKKAPTKKPAGKSKTTTNKKSGKKR

Sequences:

>Translated_231_residues
MSKPSPRNANQPQKPSASFNKKTRSRLAELAAQKKAKADDLEQVHPVPTEEEIKKALGNIFEGLSNGLDLQQILGLSDYL
LEEIYTVAYTFYSQGKYNEAVGLFQLLAAAQPQNYKYMLGLSSCYHQLHLYNEAAFGFFLAFDAQPDNPIPPYYIADSLL
KLQQPEESNNFLDVTMDICGNNPEFKILKERCQIMKQSIEKQMAGETKKAPTKKPAGKSKTTTNKKSGKKR
>Mature_230_residues
SKPSPRNANQPQKPSASFNKKTRSRLAELAAQKKAKADDLEQVHPVPTEEEIKKALGNIFEGLSNGLDLQQILGLSDYLL
EEIYTVAYTFYSQGKYNEAVGLFQLLAAAQPQNYKYMLGLSSCYHQLHLYNEAAFGFFLAFDAQPDNPIPPYYIADSLLK
LQQPEESNNFLDVTMDICGNNPEFKILKERCQIMKQSIEKQMAGETKKAPTKKPAGKSKTTTNKKSGKKR

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25947; Mature: 25816

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPSPRNANQPQKPSASFNKKTRSRLAELAAQKKAKADDLEQVHPVPTEEEIKKALGNI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHH
FEGLSNGLDLQQILGLSDYLLEEIYTVAYTFYSQGKYNEAVGLFQLLAAAQPQNYKYMLG
HHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEE
LSSCYHQLHLYNEAAFGFFLAFDAQPDNPIPPYYIADSLLKLQQPEESNNFLDVTMDICG
HHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECC
NNPEFKILKERCQIMKQSIEKQMAGETKKAPTKKPAGKSKTTTNKKSGKKR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKPSPRNANQPQKPSASFNKKTRSRLAELAAQKKAKADDLEQVHPVPTEEEIKKALGNI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHH
FEGLSNGLDLQQILGLSDYLLEEIYTVAYTFYSQGKYNEAVGLFQLLAAAQPQNYKYMLG
HHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEE
LSSCYHQLHLYNEAAFGFFLAFDAQPDNPIPPYYIADSLLKLQQPEESNNFLDVTMDICG
HHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECC
NNPEFKILKERCQIMKQSIEKQMAGETKKAPTKKPAGKSKTTTNKKSGKKR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA