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The map label for this gene is nusB

Identifier: 16752038

GI number: 16752038

Start: 931911

End: 932402

Strand: Direct

Name: nusB

Synonym: CP0866

Alternate gene names: 16752038

Gene position: 931911-932402 (Clockwise)

Preceding gene: 16752032

Following gene: 16752039

Centisome position: 75.77

GC content: 37.4

Gene sequence:

>492_bases
TTGCTTGTCATGGCCACATTGAGTCCTGAAAAATTCTCGGGGTCCCCTATTTCGATCTCGAAGGAATTCCCTCAGCAAAA
GATGAGAGAAATCATCTTGCAGATGTTGTATGCCCTAGATATGGCTCCTTCAGCAGAGGACAGTTTAGTTCCTTTGCTTA
TGTCACAAACTGCGGTGTCTCAAAAACACGTACTCGTAGCTTTAAACCAGACTAAAAGCATTTTAGAAAAATCACAAGAA
TTGGATCTAATTATTGGGAATGCTCTTAAAAATAAGTCTTTTGATAGTTTAGATCTTGTAGAAAAAAATGTCCTACGCCT
GACTCTCTTTGAGCATTTTTACAGCCCACCCATTAACAAGGCCATTCTTATTGCAGAAGCAATTCGTCTAGTTAAAAAGT
TTAGTTATTCAGAAGCCTGTCCTTTCATTCAGGCGATTTTGAATGACATTTTCACAGATTCATCTCTAAATGAAAATTCT
TTATCAATCTGA

Upstream 100 bases:

>100_bases
GCAATTAAAACTTTCTAATAGATAACCTTGTTTCTTTCTCACAACTCCTTAGCTAAGGACCTCTTTAGCAGTTAAATGTG
TATTATTAACTATTTTTTGG

Downstream 100 bases:

>100_bases
TTAATTTAGACCAAGGGATTCTAAAAATGAAAGAAGCTGCGCCTATGCATTTTCCTTTTCCTGTTCGTCGTAGTGTGTGG
CTGAATAGGTATTCCACTTT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MLVMATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILEKSQE
LDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEACPFIQAILNDIFTDSSLNENS
LSI

Sequences:

>Translated_163_residues
MLVMATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILEKSQE
LDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEACPFIQAILNDIFTDSSLNENS
LSI
>Mature_163_residues
MLVMATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILEKSQE
LDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEACPFIQAILNDIFTDSSLNENS
LSI

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 18218; Mature: 18218

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVMATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVS
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
QKHVLVALNQTKSILEKSQELDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINK
CCCEEEEEHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
AILIAEAIRLVKKFSYSEACPFIQAILNDIFTDSSLNENSLSI
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLVMATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVS
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
QKHVLVALNQTKSILEKSQELDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINK
CCCEEEEEHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
AILIAEAIRLVKKFSYSEACPFIQAILNDIFTDSSLNENSLSI
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]