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The map label for this gene is rnpA

Identifier: 13358168

GI number: 13358168

Start: 751056

End: 751397

Strand: Reverse

Name: rnpA

Synonym: UU603

Alternate gene names: 13358168

Gene position: 751397-751056 (Counterclockwise)

Preceding gene: 13358169

Following gene: 13358167

Centisome position: 99.96

GC content: 25.44

Gene sequence:

>342_bases
ATGGCTAATTTTATTAGTCTAAAAAAAAATGAAGATATACTTGATACAATTAAGAAACAACAAAAAATTCATTCTAATCA
AATCGTAGTTTATTTTCGTAAAACCAATCTAAAAAATGTTCGCTTAGCTATAAGCATTTCTAAAAAAAAGTTTAAATTAG
CAACACAACGCAATCGAATTCGACGCCTGATTAAAGCATGGTTTATTGCTGCTGATATTCCCATTAAAAGTTATGATATT
GTAGTCTTAGTGAAACCATCGTTTATTGATGGTTCTTTTGTTTTAAATTGTAATAATCTTAAAATAATTCTTCAACGAAT
TATTAACAAAGAAAAAAGATAA

Upstream 100 bases:

>100_bases
TTCGTGCACGCATGAAAACAAAAAATGGGCGTAATGTTTTAGCTAGAAGAAGACTTAAAGGGCGTCATAGTCTAACAGTT
TCTAGTGAAAAATAATTTTT

Downstream 100 bases:

>100_bases
AATTAGCAAGTAATTTTTGAATTGAAAAGGAGGTATAAATGTCATCTGTTGATAAACAAAATTTAACAAATAGAATGCGG
ATTTCTGTTTCACATTTTGC

Product: ribonuclease p - protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MANFISLKKNEDILDTIKKQQKIHSNQIVVYFRKTNLKNVRLAISISKKKFKLATQRNRIRRLIKAWFIAADIPIKSYDI
VVLVKPSFIDGSFVLNCNNLKIILQRIINKEKR

Sequences:

>Translated_113_residues
MANFISLKKNEDILDTIKKQQKIHSNQIVVYFRKTNLKNVRLAISISKKKFKLATQRNRIRRLIKAWFIAADIPIKSYDI
VVLVKPSFIDGSFVLNCNNLKIILQRIINKEKR
>Mature_112_residues
ANFISLKKNEDILDTIKKQQKIHSNQIVVYFRKTNLKNVRLAISISKKKFKLATQRNRIRRLIKAWFIAADIPIKSYDIV
VLVKPSFIDGSFVLNCNNLKIILQRIINKEKR

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_UREP2 (B1AJP4)

Other databases:

- EMBL:   CP000942
- RefSeq:   YP_001752688.1
- ProteinModelPortal:   B1AJP4
- SMR:   B1AJP4
- GeneID:   6155469
- GenomeReviews:   CP000942_GR
- KEGG:   upa:UPA3_0643
- HOGENOM:   HBG734595
- OMA:   LVESYDI
- ProtClustDB:   CLSK2299007
- BioCyc:   UPAR505682:UPA3_0643-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13282; Mature: 13151

Theoretical pI: Translated: 11.39; Mature: 11.39

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANFISLKKNEDILDTIKKQQKIHSNQIVVYFRKTNLKNVRLAISISKKKFKLATQRNRI
CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHH
RRLIKAWFIAADIPIKSYDIVVLVKPSFIDGSFVLNCNNLKIILQRIINKEKR
HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
ANFISLKKNEDILDTIKKQQKIHSNQIVVYFRKTNLKNVRLAISISKKKFKLATQRNRI
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHH
RRLIKAWFIAADIPIKSYDIVVLVKPSFIDGSFVLNCNNLKIILQRIINKEKR
HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA