Definition Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome.
Accession NC_002162
Length 751,719

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Identifier: 13357898

GI number: 13357898

Start: 383742

End: 385628

Strand: Direct

Name: Not Available

Synonym: UU338

Alternate gene names: NA

Gene position: 383742-385628 (Clockwise)

Preceding gene: 13357897

Following gene: 13357899

Centisome position: 51.05

GC content: 23.21

Gene sequence:

>1887_bases
ATGATTGACAAGCAAAAAATTAAACAACTAATCCAAAATCCTGTTTATGGATTTTTTGATGAATTTAAAAAAAATTTAAA
CAGCGATCTTGATCATGTAATTTTAGAACAATTAAAAGATCAAGATAATAATATTGATAAAATTAATCATTTAGTAACCG
ATATTAATAATTTAAAAAATGATATTAAACAACGCAAAAAAGATGAAAAAATTAAACAACGGACTTTTTGTAATATTCTA
ATCGCAGTTTGTTTTGTTATTATTATTGGTTTGTTTTTTTTACATTTTTATTTGAAAAATTCCAAATTTATTAAAAATTT
TAAAAAGTATGAAATTGAAAAAAATAATCAAATTAATATATGTAACAGCCAAAAAAATAAATATATTTATAATGTTTTAT
CACAAATTAATTCTTATAAAATTTCGCAAGAAATTTTTGCTAAGAATGGTTTATATTTAATGCCAGAAATTCAATATGAA
AATATTAAACAAACCGATTTATTAATTTCACGAAACGCAAAATTTGTTGGATTTTTTGGTGGTTTAGAAGTTAAATTTAA
AAGTACGGATACTTTTTTAGTGTATTATAAGGAATTTTCAATTAAAGATGTTGTAACAAGTGGTTGTATTCAAATTTCTT
ATCGAAAAGGAGATCAAATGGTTAGTGAAACGATCGTTGCTCATCATAAGGAACCAACACCGTTTGTTGATCTTCACAGT
AATTTTGTTCATAAAACTAATTACTCTCCAAACTTTAACTTTTCAACGTACGCTCAAACTGTTAATTCTCGTTCAAAAAC
AATTTTTTCTAATTTAGAATTTTCTAAGTATTATGGCTTAGGAATTGCTACTCAAAATTTAGAATTTGATACAAAAATGC
TAGAATTTTTTACGCCTTTTAGTCAAGAAAACTATGAAAATTTTGCTAAATATTTAAAACAAGATGATATCACAGTTCCT
ATGTTTACAAAAACTGCGACATCCCTTATTATTGATGATCAATTATTAAAAGATAATAGAAAACCATTCTTTATAAATTT
ATTAACAAATAATAGTTATGTAAAAACTTGTGATTTTCTAATTGATACAGATATTAATGCGGACCTACAAACGAATTTAA
ATATTTTAAAATATGAATTAGTAAAATTATTTGAAAAATATATTTTATATTTAACTACAACAAGTTTATCAAGTGTAATT
GCCCGAGAATGATATATTAATAATGATACTTATAAAATTGGTGATAATTACGATTATGAAAGTTATTATTATACTAATCA
AAATCAATTAACTCCACTATCAGTTTCGACAAAACTTTTTTTAAAAAACCAAATAGCTTTTGTTAATGATTGTGAAGTAA
TTCCTTTTGCTGAACTAGTTAATAATCAAACACGATTCGGCATTAATAAAGCACAGTTTAATATTAAAAGTTATCATGTT
TATAATCGTGTAGATAATGTACCAGTATATGCGCATGGCAGAACACACATTGTTCCTGTACAATACAAAGAGTACATCGA
ATATGAATATCCATTTATTTGTTTATATGTTTTAAAATATAAACAGTTAACAGAAGAAATAGGTTTAAAATATTTTACAC
GCCCATTTAATAATATTTTATTAACAAATTTTGAAGATCATAGTGCTTGTTCTATTGATGAAATTCTTGATTTTAATGAT
AATGAATCCAAAAATAATAGCGATAATGATTTTAAAATTTATTTAAAAGAATTAGATACAATCGTCACAAATGCGAATTT
AAATAAAAATGAATTTAGCTTCTTAAAAGACAATGATGGTTATTTCATTACGATAAGTAATAAAATAGAATTAGACGAAG
AAACTGAACAAGAATTATCAACTTGATTAAGAAAAGTAAGCTTATAG

Upstream 100 bases:

>100_bases
TTATTTTTGAATTATTTTAAATAAGTGTTACTTATCAGCCATATTTTTTTGTAGTATTATATAATAATATAAATAATCAA
ATAAGAAAATAGTATTTATT

Downstream 100 bases:

>100_bases
AAAACAAAAATAAAAAATAATTTGCATTAAAAATTAAACTCAATCAAATTATTTTTAACAAACGAAAATTTATTTTTATA
AAATTAGCACTCAATATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 628; Mature: 628

Protein sequence:

>628_residues
MIDKQKIKQLIQNPVYGFFDEFKKNLNSDLDHVILEQLKDQDNNIDKINHLVTDINNLKNDIKQRKKDEKIKQRTFCNIL
IAVCFVIIIGLFFLHFYLKNSKFIKNFKKYEIEKNNQINICNSQKNKYIYNVLSQINSYKISQEIFAKNGLYLMPEIQYE
NIKQTDLLISRNAKFVGFFGGLEVKFKSTDTFLVYYKEFSIKDVVTSGCIQISYRKGDQMVSETIVAHHKEPTPFVDLHS
NFVHKTNYSPNFNFSTYAQTVNSRSKTIFSNLEFSKYYGLGIATQNLEFDTKMLEFFTPFSQENYENFAKYLKQDDITVP
MFTKTATSLIIDDQLLKDNRKPFFINLLTNNSYVKTCDFLIDTDINADLQTNLNILKYELVKLFEKYILYLTTTSLSSVI
AREWYINNDTYKIGDNYDYESYYYTNQNQLTPLSVSTKLFLKNQIAFVNDCEVIPFAELVNNQTRFGINKAQFNIKSYHV
YNRVDNVPVYAHGRTHIVPVQYKEYIEYEYPFICLYVLKYKQLTEEIGLKYFTRPFNNILLTNFEDHSACSIDEILDFND
NESKNNSDNDFKIYLKELDTIVTNANLNKNEFSFLKDNDGYFITISNKIELDEETEQELSTWLRKVSL

Sequences:

>Translated_628_residues
MIDKQKIKQLIQNPVYGFFDEFKKNLNSDLDHVILEQLKDQDNNIDKINHLVTDINNLKNDIKQRKKDEKIKQRTFCNIL
IAVCFVIIIGLFFLHFYLKNSKFIKNFKKYEIEKNNQINICNSQKNKYIYNVLSQINSYKISQEIFAKNGLYLMPEIQYE
NIKQTDLLISRNAKFVGFFGGLEVKFKSTDTFLVYYKEFSIKDVVTSGCIQISYRKGDQMVSETIVAHHKEPTPFVDLHS
NFVHKTNYSPNFNFSTYAQTVNSRSKTIFSNLEFSKYYGLGIATQNLEFDTKMLEFFTPFSQENYENFAKYLKQDDITVP
MFTKTATSLIIDDQLLKDNRKPFFINLLTNNSYVKTCDFLIDTDINADLQTNLNILKYELVKLFEKYILYLTTTSLSSVI
ARE*YINNDTYKIGDNYDYESYYYTNQNQLTPLSVSTKLFLKNQIAFVNDCEVIPFAELVNNQTRFGINKAQFNIKSYHV
YNRVDNVPVYAHGRTHIVPVQYKEYIEYEYPFICLYVLKYKQLTEEIGLKYFTRPFNNILLTNFEDHSACSIDEILDFND
NESKNNSDNDFKIYLKELDTIVTNANLNKNEFSFLKDNDGYFITISNKIELDEETEQELST*LRKVSL
>Mature_628_residues
MIDKQKIKQLIQNPVYGFFDEFKKNLNSDLDHVILEQLKDQDNNIDKINHLVTDINNLKNDIKQRKKDEKIKQRTFCNIL
IAVCFVIIIGLFFLHFYLKNSKFIKNFKKYEIEKNNQINICNSQKNKYIYNVLSQINSYKISQEIFAKNGLYLMPEIQYE
NIKQTDLLISRNAKFVGFFGGLEVKFKSTDTFLVYYKEFSIKDVVTSGCIQISYRKGDQMVSETIVAHHKEPTPFVDLHS
NFVHKTNYSPNFNFSTYAQTVNSRSKTIFSNLEFSKYYGLGIATQNLEFDTKMLEFFTPFSQENYENFAKYLKQDDITVP
MFTKTATSLIIDDQLLKDNRKPFFINLLTNNSYVKTCDFLIDTDINADLQTNLNILKYELVKLFEKYILYLTTTSLSSVI
ARE*YINNDTYKIGDNYDYESYYYTNQNQLTPLSVSTKLFLKNQIAFVNDCEVIPFAELVNNQTRFGINKAQFNIKSYHV
YNRVDNVPVYAHGRTHIVPVQYKEYIEYEYPFICLYVLKYKQLTEEIGLKYFTRPFNNILLTNFEDHSACSIDEILDFND
NESKNNSDNDFKIYLKELDTIVTNANLNKNEFSFLKDNDGYFITISNKIELDEETEQELST*LRKVSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 73640; Mature: 73640

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKQKIKQLIQNPVYGFFDEFKKNLNSDLDHVILEQLKDQDNNIDKINHLVTDINNLKN
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DIKQRKKDEKIKQRTFCNILIAVCFVIIIGLFFLHFYLKNSKFIKNFKKYEIEKNNQINI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCEEEE
CNSQKNKYIYNVLSQINSYKISQEIFAKNGLYLMPEIQYENIKQTDLLISRNAKFVGFFG
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEEECCCCEEEEEC
GLEVKFKSTDTFLVYYKEFSIKDVVTSGCIQISYRKGDQMVSETIVAHHKEPTPFVDLHS
CEEEEEECCCEEEEEEECCCHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCCEEECCC
NFVHKTNYSPNFNFSTYAQTVNSRSKTIFSNLEFSKYYGLGIATQNLEFDTKMLEFFTPF
CEEEECCCCCCCCHHHHHHHHHCCCHHHHHCCCCHHEECCEEEECCCCHHHHHHHHHCCC
SQENYENFAKYLKQDDITVPMFTKTATSLIIDDQLLKDNRKPFFINLLTNNSYVKTCDFL
CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHCCCCCEEEEEEECCCEEEEEEEE
IDTDINADLQTNLNILKYELVKLFEKYILYLTTTSLSSVIAREYINNDTYKIGDNYDYES
EECCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCC
YYYTNQNQLTPLSVSTKLFLKNQIAFVNDCEVIPFAELVNNQTRFGINKAQFNIKSYHVY
EEEECCCCCCEEECCEEEEEECCEEEECCCCCCCHHHHHCCCHHCCCCHHEEEEEEEEEE
NRVDNVPVYAHGRTHIVPVQYKEYIEYEYPFICLYVLKYKQLTEEIGLKYFTRPFNNILL
CCCCCCEEEECCCEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEE
TNFEDHSACSIDEILDFNDNESKNNSDNDFKIYLKELDTIVTNANLNKNEFSFLKDNDGY
ECCCCCCCCCHHHHHCCCCCCCCCCCCCHHEEHHHHHHHHHCCCCCCCCCCCEEECCCCE
FITISNKIELDEETEQELSTLRKVSL
EEEECCEEECCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDKQKIKQLIQNPVYGFFDEFKKNLNSDLDHVILEQLKDQDNNIDKINHLVTDINNLKN
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DIKQRKKDEKIKQRTFCNILIAVCFVIIIGLFFLHFYLKNSKFIKNFKKYEIEKNNQINI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCEEEE
CNSQKNKYIYNVLSQINSYKISQEIFAKNGLYLMPEIQYENIKQTDLLISRNAKFVGFFG
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEEECCCCEEEEEC
GLEVKFKSTDTFLVYYKEFSIKDVVTSGCIQISYRKGDQMVSETIVAHHKEPTPFVDLHS
CEEEEEECCCEEEEEEECCCHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCCEEECCC
NFVHKTNYSPNFNFSTYAQTVNSRSKTIFSNLEFSKYYGLGIATQNLEFDTKMLEFFTPF
CEEEECCCCCCCCHHHHHHHHHCCCHHHHHCCCCHHEECCEEEECCCCHHHHHHHHHCCC
SQENYENFAKYLKQDDITVPMFTKTATSLIIDDQLLKDNRKPFFINLLTNNSYVKTCDFL
CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHCCCCCEEEEEEECCCEEEEEEEE
IDTDINADLQTNLNILKYELVKLFEKYILYLTTTSLSSVIAREYINNDTYKIGDNYDYES
EECCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCC
YYYTNQNQLTPLSVSTKLFLKNQIAFVNDCEVIPFAELVNNQTRFGINKAQFNIKSYHVY
EEEECCCCCCEEECCEEEEEECCEEEECCCCCCCHHHHHCCCHHCCCCHHEEEEEEEEEE
NRVDNVPVYAHGRTHIVPVQYKEYIEYEYPFICLYVLKYKQLTEEIGLKYFTRPFNNILL
CCCCCCEEEECCCEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEE
TNFEDHSACSIDEILDFNDNESKNNSDNDFKIYLKELDTIVTNANLNKNEFSFLKDNDGY
ECCCCCCCCCHHHHHCCCCCCCCCCCCCHHEEHHHHHHHHHCCCCCCCCCCCEEECCCCE
FITISNKIELDEETEQELSTLRKVSL
EEEECCEEECCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA