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Identifier: 15004870

GI number: 15004870

Start: 180992

End: 181546

Strand: Direct

Name: Not Available

Synonym: CA_P0167

Alternate gene names: NA

Gene position: 180992-181546 (Clockwise)

Preceding gene: 15004869

Following gene: 15004872

Centisome position: 94.27

GC content: 26.49

Gene sequence:

>555_bases
ATGAAGCCTTTATCTAACGAAAACCTAAATATTTTGGTTCTTAAATCACGCTCTGGTGATAATGCCTCTTTAAATAAAAT
ATTTAACTATTTTGGCCCATTTATAAAAAGTTTCACTAAAAACATATATATAAGAAACTTCGACAAAAGCGATATATACG
AGGAATGTAACTTTTCAATTCTGTTATCAATCAAAAAATGTGACATAAAAAAATATAACTTCACTGCTTACACCATAAGT
TCCATTAAAAATAACATATATTATAAAATAAGAAATCAAGCAAAATTCCAGTCTGAATTAAGCCTTAACGCAAAAGTAAC
TGACCAAAACTGCACTTTTCAAGATATTCTTATAGATAAAACGAATCATTTTAAGAACTTATCTATCAAAAATGCCTTAA
CCAGTTTAGACAAGAAAGAACAAGATATTATAGACCATATTTACTTTTTAGGATACTCTTCTATTGAGTATTCTAAAAAA
TCAGGCATAAATTATAGAACATGTCTTAGACGAAAAAACAGTGCTTTAAAGAAACTAAAGAGAAAGTTAAATTAA

Upstream 100 bases:

>100_bases
AATAGAAGGTAAAATGGAAGCCCTTACAAGCTCCATAAATAATCTCACAAACACTATAAACAATTCCAATACAAAAAATA
AATAAATTGGAGGTTTTTTA

Downstream 100 bases:

>100_bases
ATGGCCTGTACTAGATTGTACAAGCCATTGATTTTTCACTTAATTATTTGTTGAAGAAAAATTATAGTTATTACTGTTAT
TATTATCCCATGTACCTGAC

Product: sigF/sigE family sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKPLSNENLNILVLKSRSGDNASLNKIFNYFGPFIKSFTKNIYIRNFDKSDIYEECNFSILLSIKKCDIKKYNFTAYTIS
SIKNNIYYKIRNQAKFQSELSLNAKVTDQNCTFQDILIDKTNHFKNLSIKNALTSLDKKEQDIIDHIYFLGYSSIEYSKK
SGINYRTCLRRKNSALKKLKRKLN

Sequences:

>Translated_184_residues
MKPLSNENLNILVLKSRSGDNASLNKIFNYFGPFIKSFTKNIYIRNFDKSDIYEECNFSILLSIKKCDIKKYNFTAYTIS
SIKNNIYYKIRNQAKFQSELSLNAKVTDQNCTFQDILIDKTNHFKNLSIKNALTSLDKKEQDIIDHIYFLGYSSIEYSKK
SGINYRTCLRRKNSALKKLKRKLN
>Mature_184_residues
MKPLSNENLNILVLKSRSGDNASLNKIFNYFGPFIKSFTKNIYIRNFDKSDIYEECNFSILLSIKKCDIKKYNFTAYTIS
SIKNNIYYKIRNQAKFQSELSLNAKVTDQNCTFQDILIDKTNHFKNLSIKNALTSLDKKEQDIIDHIYFLGYSSIEYSKK
SGINYRTCLRRKNSALKKLKRKLN

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4167_CLOAB (P23672)

Other databases:

- EMBL:   M55392
- EMBL:   AE001438
- PIR:   C37837
- RefSeq:   NP_149330.1
- ProteinModelPortal:   P23672
- GeneID:   1116172
- GenomeReviews:   AE001438_GR
- KEGG:   cac:CA_P0167
- OMA:   DIENECY
- BioCyc:   CACE272562:CAP0167-MONOMER
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013325
- InterPro:   IPR013324
- TIGRFAMs:   TIGR02937

Pfam domain/function: PF04542 Sigma70_r2; SSF88946 Sigma_r2; SSF88659 Sigma_r3_r4

EC number: NA

Molecular weight: Translated: 21562; Mature: 21562

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLSNENLNILVLKSRSGDNASLNKIFNYFGPFIKSFTKNIYIRNFDKSDIYEECNFSI
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHCCEEE
LLSIKKCDIKKYNFTAYTISSIKNNIYYKIRNQAKFQSELSLNAKVTDQNCTFQDILIDK
EEEEECCCCEEECEEEEEHHHHCCCEEEEECCCHHHHHHCCCCEEECCCCCCCHHEEEEC
TNHFKNLSIKNALTSLDKKEQDIIDHIYFLGYSSIEYSKKSGINYRTCLRRKNSALKKLK
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
RKLN
HHCC
>Mature Secondary Structure
MKPLSNENLNILVLKSRSGDNASLNKIFNYFGPFIKSFTKNIYIRNFDKSDIYEECNFSI
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHCCEEE
LLSIKKCDIKKYNFTAYTISSIKNNIYYKIRNQAKFQSELSLNAKVTDQNCTFQDILIDK
EEEEECCCCEEECEEEEEHHHHCCCEEEEECCCHHHHHHCCCCEEECCCCCCCHHEEEEC
TNHFKNLSIKNALTSLDKKEQDIIDHIYFLGYSSIEYSKKSGINYRTCLRRKNSALKKLK
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
RKLN
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254264; 11466286