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The map label for this gene is recD [H]

Identifier: 15594977

GI number: 15594977

Start: 663179

End: 665011

Strand: Reverse

Name: recD [H]

Synonym: BB0632

Alternate gene names: 15594977

Gene position: 665011-663179 (Counterclockwise)

Preceding gene: 15594978

Following gene: 15594976

Centisome position: 73.02

GC content: 24.28

Gene sequence:

>1833_bases
ATGAGAGATTTTTTAGTATTAAGAGAATTTTTAAAAGATAAAAACAAAAAATTCTTAACCCCCGAGCTTAAACTTTATGA
AATAATTGAACTTTTAAATATCAATAAAAAAAATTGTTATAAAGCACAAACACTTGCAAGATCCACAAACAATGAAAATA
TTGTAATATTTTTAATATTTTTATTTAACTACTTTGATAAAGGCCATTTAAGAGCTGACATAAATCTATTAGCAAAAGAT
ATTCAAAATACAATAATATTCACAAAAGACAACCTAGAAAAAACCAATAAAAGTTACAACAAATTAATAAAAATACTAAA
AGGGCTAGAAACATTTGGAAATCTAGAAACTATTAAGAATATAGTTTTACTTTTAAAGAAAAACAACATACTAATGGAAT
TTAACAAGCTTAAAATTACAACTCCCCTAATCCTGGAAAACAATATTTACATTTATACTCAAAAAAACTACAGAGAAGAA
GAAGAATTAATAAAACAAATTATAAAAAGATTAGAAAACCATAAAAGCGAATTAAATGACAATAAAATACAAAATATAAT
ATCAAATTTAAATACCAATAATTTAAATAAAGAGCAAATTACATCAGTGAGAAAGGCATTAAAAAGCAACTTCTTTCTAT
TAAGCGGAGGCCCGGGAACAGGCAAAACAACAACTGTTAACTATATCTTAAAAGCAATTAATAAAACATTAAACAATAAA
AAAAAAGGATTAGTAGCCATTACAGCACCTACAGGAAAAGCTAGCCTAAGGCTGCAAACAAGTATCGACTATTCATTCAA
AAATTTAGAAATAGAATGTAATACAATCCAAAAACTATTGGGAATCAAATTCATAAACAAAAAAAATCTATATGATGAAG
AAAATCAATTAAATTTTGACGTAATAATAATTGACGAAGCTTCAATGGTAGATGCACATACTTTTTTAAAACTACTGAAA
GCAACTCCAATAACCACTAAGTTAATAATGGTAGGAGATAAAAATCAACTCCCGTCAGTAAACGAAGGAAATGTATATTC
AAGTCTTTTGGGAATACAAAAAATAAATAGCGATAATGTAGAAGATCTTAAAGAAAATTTCAGAAGCAACAAAGAAATAA
ATTTACTCTCAAAGGCAATATACAAAGAAGATAGTACTTTGATTTGCAAATACATTAATAATAATAAAAATATTCAACTG
AAAGAAATAGAAAAAATAAACTTAAAAAAAGATCTAATAGAATATACAAACAATTTATACAGAAAAATACCCACTTTTAA
TCTTAAATTACTAAAAGAATCAAAAATTGAAACAATACTTGAAACTTTACTTGAAAATATAATTTTAAGTTCAAAAAATT
TTGGCAAATTTGGAACTAAAACACTAAATGAAATAATAAAAACTTACCTGAAAAAGACCTATGGAAGCTTTATTGGCCAA
ATAATAATGATAACTAAAACTGACTATAAAAATAAATTATTTAATGGAGAACGGGGTGTTATTTTTAATGAAAATTCTAA
ATTTTATGCTTTATTCCAAAGAAAAGATGAAAAATATAAAAAAATAAATTTAGATTTACTAACAAATTATGAATTCAGCT
TTGCCACAACAATACATAAAAGCCAAGGATCTGAATACAAACATATAAAAGTAATATTAGAAAATAACCCTTTTTTGACA
AAAGAACTTATGTATACTGCAATAACAAGAGCCAAGGATAGCTTAGAAATAATTTCTAACAAAGAGACTATTATTAAGTT
AAGCAAAAAATCTAGCAAAAGAGATTCAAAAATACTAGAACACGTAAACTCATTTAAAGAAATTGACAAATAA

Upstream 100 bases:

>100_bases
TAAAATCAAAATTTGAAAATGGTATTTATTTTAATCTTCCAAAATTTAACGACGTGGATTTAGATAAAATCATCTTAGAG
TTAGGCATTAAAAGACACTT

Downstream 100 bases:

>100_bases
ATTAAAAACTACTATAATCTTTTTAAAAGAATGGCTTTGGGGGCGTAGTTCAGGTGGTTAGAACGCCTGCCTGTCACGCA
GGAGGTCGCGGGTTCGAGAC

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 610; Mature: 610

Protein sequence:

>610_residues
MRDFLVLREFLKDKNKKFLTPELKLYEIIELLNINKKNCYKAQTLARSTNNENIVIFLIFLFNYFDKGHLRADINLLAKD
IQNTIIFTKDNLEKTNKSYNKLIKILKGLETFGNLETIKNIVLLLKKNNILMEFNKLKITTPLILENNIYIYTQKNYREE
EELIKQIIKRLENHKSELNDNKIQNIISNLNTNNLNKEQITSVRKALKSNFFLLSGGPGTGKTTTVNYILKAINKTLNNK
KKGLVAITAPTGKASLRLQTSIDYSFKNLEIECNTIQKLLGIKFINKKNLYDEENQLNFDVIIIDEASMVDAHTFLKLLK
ATPITTKLIMVGDKNQLPSVNEGNVYSSLLGIQKINSDNVEDLKENFRSNKEINLLSKAIYKEDSTLICKYINNNKNIQL
KEIEKINLKKDLIEYTNNLYRKIPTFNLKLLKESKIETILETLLENIILSSKNFGKFGTKTLNEIIKTYLKKTYGSFIGQ
IIMITKTDYKNKLFNGERGVIFNENSKFYALFQRKDEKYKKINLDLLTNYEFSFATTIHKSQGSEYKHIKVILENNPFLT
KELMYTAITRAKDSLEIISNKETIIKLSKKSSKRDSKILEHVNSFKEIDK

Sequences:

>Translated_610_residues
MRDFLVLREFLKDKNKKFLTPELKLYEIIELLNINKKNCYKAQTLARSTNNENIVIFLIFLFNYFDKGHLRADINLLAKD
IQNTIIFTKDNLEKTNKSYNKLIKILKGLETFGNLETIKNIVLLLKKNNILMEFNKLKITTPLILENNIYIYTQKNYREE
EELIKQIIKRLENHKSELNDNKIQNIISNLNTNNLNKEQITSVRKALKSNFFLLSGGPGTGKTTTVNYILKAINKTLNNK
KKGLVAITAPTGKASLRLQTSIDYSFKNLEIECNTIQKLLGIKFINKKNLYDEENQLNFDVIIIDEASMVDAHTFLKLLK
ATPITTKLIMVGDKNQLPSVNEGNVYSSLLGIQKINSDNVEDLKENFRSNKEINLLSKAIYKEDSTLICKYINNNKNIQL
KEIEKINLKKDLIEYTNNLYRKIPTFNLKLLKESKIETILETLLENIILSSKNFGKFGTKTLNEIIKTYLKKTYGSFIGQ
IIMITKTDYKNKLFNGERGVIFNENSKFYALFQRKDEKYKKINLDLLTNYEFSFATTIHKSQGSEYKHIKVILENNPFLT
KELMYTAITRAKDSLEIISNKETIIKLSKKSSKRDSKILEHVNSFKEIDK
>Mature_610_residues
MRDFLVLREFLKDKNKKFLTPELKLYEIIELLNINKKNCYKAQTLARSTNNENIVIFLIFLFNYFDKGHLRADINLLAKD
IQNTIIFTKDNLEKTNKSYNKLIKILKGLETFGNLETIKNIVLLLKKNNILMEFNKLKITTPLILENNIYIYTQKNYREE
EELIKQIIKRLENHKSELNDNKIQNIISNLNTNNLNKEQITSVRKALKSNFFLLSGGPGTGKTTTVNYILKAINKTLNNK
KKGLVAITAPTGKASLRLQTSIDYSFKNLEIECNTIQKLLGIKFINKKNLYDEENQLNFDVIIIDEASMVDAHTFLKLLK
ATPITTKLIMVGDKNQLPSVNEGNVYSSLLGIQKINSDNVEDLKENFRSNKEINLLSKAIYKEDSTLICKYINNNKNIQL
KEIEKINLKKDLIEYTNNLYRKIPTFNLKLLKESKIETILETLLENIILSSKNFGKFGTKTLNEIIKTYLKKTYGSFIGQ
IIMITKTDYKNKLFNGERGVIFNENSKFYALFQRKDEKYKKINLDLLTNYEFSFATTIHKSQGSEYKHIKVILENNPFLT
KELMYTAITRAKDSLEIISNKETIIKLSKKSSKRDSKILEHVNSFKEIDK

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=415, Percent_Identity=25.7831325301205, Blast_Score=148, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 70816; Mature: 70816

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDFLVLREFLKDKNKKFLTPELKLYEIIELLNINKKNCYKAQTLARSTNNENIVIFLIF
CCHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEHHH
LFNYFDKGHLRADINLLAKDIQNTIIFTKDNLEKTNKSYNKLIKILKGLETFGNLETIKN
HHHHCCCCCEEHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
IVLLLKKNNILMEFNKLKITTPLILENNIYIYTQKNYREEEELIKQIIKRLENHKSELND
HHEEEECCCEEEEEEEEEEECCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCH
NKIQNIISNLNTNNLNKEQITSVRKALKSNFFLLSGGPGTGKTTTVNYILKAINKTLNNK
HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
KKGLVAITAPTGKASLRLQTSIDYSFKNLEIECNTIQKLLGIKFINKKNLYDEENQLNFD
CCCEEEEECCCCCCEEEEEEEECEEEEEEEEEHHHHHHHHCEEEECCCCCCCCCCCCEEE
VIIIDEASMVDAHTFLKLLKATPITTKLIMVGDKNQLPSVNEGNVYSSLLGIQKINSDNV
EEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCH
EDLKENFRSNKEINLLSKAIYKEDSTLICKYINNNKNIQLKEIEKINLKKDLIEYTNNLY
HHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH
RKIPTFNLKLLKESKIETILETLLENIILSSKNFGKFGTKTLNEIIKTYLKKTYGSFIGQ
HHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCE
IIMITKTDYKNKLFNGERGVIFNENSKFYALFQRKDEKYKKINLDLLTNYEFSFATTIHK
EEEEEECCHHHHHCCCCCCEEECCCCCEEEEEECCCCHHHEEEEEEEECCCEEEEEEEEC
SQGSEYKHIKVILENNPFLTKELMYTAITRAKDSLEIISNKETIIKLSKKSSKRDSKILE
CCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCCHHHHHHH
HVNSFKEIDK
HHHHHHHCCC
>Mature Secondary Structure
MRDFLVLREFLKDKNKKFLTPELKLYEIIELLNINKKNCYKAQTLARSTNNENIVIFLIF
CCHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEHHH
LFNYFDKGHLRADINLLAKDIQNTIIFTKDNLEKTNKSYNKLIKILKGLETFGNLETIKN
HHHHCCCCCEEHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
IVLLLKKNNILMEFNKLKITTPLILENNIYIYTQKNYREEEELIKQIIKRLENHKSELND
HHEEEECCCEEEEEEEEEEECCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCH
NKIQNIISNLNTNNLNKEQITSVRKALKSNFFLLSGGPGTGKTTTVNYILKAINKTLNNK
HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
KKGLVAITAPTGKASLRLQTSIDYSFKNLEIECNTIQKLLGIKFINKKNLYDEENQLNFD
CCCEEEEECCCCCCEEEEEEEECEEEEEEEEEHHHHHHHHCEEEECCCCCCCCCCCCEEE
VIIIDEASMVDAHTFLKLLKATPITTKLIMVGDKNQLPSVNEGNVYSSLLGIQKINSDNV
EEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCH
EDLKENFRSNKEINLLSKAIYKEDSTLICKYINNNKNIQLKEIEKINLKKDLIEYTNNLY
HHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH
RKIPTFNLKLLKESKIETILETLLENIILSSKNFGKFGTKTLNEIIKTYLKKTYGSFIGQ
HHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCE
IIMITKTDYKNKLFNGERGVIFNENSKFYALFQRKDEKYKKINLDLLTNYEFSFATTIHK
EEEEEECCHHHHHCCCCCCEEECCCCCEEEEEECCCCHHHEEEEEEEECCCEEEEEEEEC
SQGSEYKHIKVILENNPFLTKELMYTAITRAKDSLEIISNKETIIKLSKKSSKRDSKILE
CCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCCHHHHHHH
HVNSFKEIDK
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]