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The map label for this gene is yodJ [H]

Identifier: 15594927

GI number: 15594927

Start: 598588

End: 599376

Strand: Reverse

Name: yodJ [H]

Synonym: BB0582

Alternate gene names: 15594927

Gene position: 599376-598588 (Counterclockwise)

Preceding gene: 15594931

Following gene: 15594921

Centisome position: 65.81

GC content: 27.12

Gene sequence:

>789_bases
ATGAAATCAATTTATGCTTTATTATTTCTATTTATTAATTTATCTTTGTTGGCTAACAACATTTCAAAAAAAGATTTAGA
AGTACTGCTAAAGATTGCCCAAGCAATGAATAAGGAATGCAAAAATTTTATTGAAAAAAATCCTATTCAGTTCTTAAAAG
AAATAAAACCCTTAGTAGATGCAGAAAAAAATAACCTCTTAACTCTAATAAATAAAAAAATACCAATTCCTGAAAATTAT
AAAATACCTGATCTGGTAAATATTGATGATTTTGAAGATCTTAAAAATCTTGGAGCAAAGACTATTAAAGTAAGAAAAAT
ATTAATCGAAGATTTAATTCGACTAATAAAAGATGCAAAAAAATTTGGGATTGAAATTAAAATCAAATCTGCTTACAGAA
CGCAAGAATATCAAAAATTTTTATTTGATTACAATGTCAAAACTTATGGCAGAAAAGTTGCAGAAACCCAATCAGCAATT
CCAGGCCATTCTCAACATCATATGGGAACAGCAATAGATTTTATAAATATAGATGATAATTTACTAAACACAAAAGAAGG
AAAATGGCTTTATGAAAACTCTCTAAAATACGGATTTTCCGTTTCATACCCAAAAGGATATGAAACGGACACTGGATATA
AAGCAGAGCCTTGGCACTACTTATACATAGGACCTAAGCCATGCTTTATTCAGAAAAAATATTTTAATAATTTACAACAT
AAGCTTCTTGAATTTTGGAACCAGAACAAAACAAATCTTATTAACCTAATTGAAAAATATGCAAACTAA

Upstream 100 bases:

>100_bases
CCTTTATTTATTACTTTTAACTAAATTTAATCCAATCTAGAATATACATATATTTAGAATTAACTATTAATTATACTAAA
ATATATTATAATTAAATAAT

Downstream 100 bases:

>100_bases
ATACTTCTTCCGGCATTCAAATAAGAACAAAAAAGATTGTCTAGTAAATCAATATCAAGCTTATCGTAAGCAGAATTATC
ATAAAAAAATAAATCAAGCT

Product: carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKSIYALLFLFINLSLLANNISKKDLEVLLKIAQAMNKECKNFIEKNPIQFLKEIKPLVDAEKNNLLTLINKKIPIPENY
KIPDLVNIDDFEDLKNLGAKTIKVRKILIEDLIRLIKDAKKFGIEIKIKSAYRTQEYQKFLFDYNVKTYGRKVAETQSAI
PGHSQHHMGTAIDFINIDDNLLNTKEGKWLYENSLKYGFSVSYPKGYETDTGYKAEPWHYLYIGPKPCFIQKKYFNNLQH
KLLEFWNQNKTNLINLIEKYAN

Sequences:

>Translated_262_residues
MKSIYALLFLFINLSLLANNISKKDLEVLLKIAQAMNKECKNFIEKNPIQFLKEIKPLVDAEKNNLLTLINKKIPIPENY
KIPDLVNIDDFEDLKNLGAKTIKVRKILIEDLIRLIKDAKKFGIEIKIKSAYRTQEYQKFLFDYNVKTYGRKVAETQSAI
PGHSQHHMGTAIDFINIDDNLLNTKEGKWLYENSLKYGFSVSYPKGYETDTGYKAEPWHYLYIGPKPCFIQKKYFNNLQH
KLLEFWNQNKTNLINLIEKYAN
>Mature_262_residues
MKSIYALLFLFINLSLLANNISKKDLEVLLKIAQAMNKECKNFIEKNPIQFLKEIKPLVDAEKNNLLTLINKKIPIPENY
KIPDLVNIDDFEDLKNLGAKTIKVRKILIEDLIRLIKDAKKFGIEIKIKSAYRTQEYQKFLFDYNVKTYGRKVAETQSAI
PGHSQHHMGTAIDFINIDDNLLNTKEGKWLYENSLKYGFSVSYPKGYETDTGYKAEPWHYLYIGPKPCFIQKKYFNNLQH
KLLEFWNQNKTNLINLIEKYAN

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 30676; Mature: 30676

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIYALLFLFINLSLLANNISKKDLEVLLKIAQAMNKECKNFIEKNPIQFLKEIKPLVD
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
AEKNNLLTLINKKIPIPENYKIPDLVNIDDFEDLKNLGAKTIKVRKILIEDLIRLIKDAK
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
KFGIEIKIKSAYRTQEYQKFLFDYNVKTYGRKVAETQSAIPGHSQHHMGTAIDFINIDDN
HCCEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC
LLNTKEGKWLYENSLKYGFSVSYPKGYETDTGYKAEPWHYLYIGPKPCFIQKKYFNNLQH
CCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHH
KLLEFWNQNKTNLINLIEKYAN
HHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKSIYALLFLFINLSLLANNISKKDLEVLLKIAQAMNKECKNFIEKNPIQFLKEIKPLVD
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
AEKNNLLTLINKKIPIPENYKIPDLVNIDDFEDLKNLGAKTIKVRKILIEDLIRLIKDAK
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
KFGIEIKIKSAYRTQEYQKFLFDYNVKTYGRKVAETQSAIPGHSQHHMGTAIDFINIDDN
HCCEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC
LLNTKEGKWLYENSLKYGFSVSYPKGYETDTGYKAEPWHYLYIGPKPCFIQKKYFNNLQH
CCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHH
KLLEFWNQNKTNLINLIEKYAN
HHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]