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The map label for this gene is yqfA [C]

Identifier: 15594463

GI number: 15594463

Start: 114807

End: 115508

Strand: Direct

Name: yqfA [C]

Synonym: BB0117

Alternate gene names: 15594463

Gene position: 114807-115508 (Clockwise)

Preceding gene: 15594456

Following gene: 15594479

Centisome position: 12.61

GC content: 28.92

Gene sequence:

>702_bases
GTGCTTAGAGAAAATAAACTTAAAAATTACTCGTTAAGCGATGTTAATACAAGCAAAATACCAAAAAATGAGCTTTTTAG
TTCAATCTCGCATCTTTTTGGAATTATTTTGTCTATCATTGGAACAACAATTCTTGTTACAATATCTACTCTTAAGAAAA
AAGATTTACATGTAGTTGTATTCTTGATTTACGGATTTTCAATGACCCTATTATATGTAATGAGCACTCTTTACCACATA
TTCCCAAAAGGAAGTAAAATAAAAAAAATATTTAGAAAATTTGATCATATTTCAATATTTATTCTAATAGCAGGAACATA
TACTCCTGCATGTGCAATCCTTGTGCCAAACAAATCAGGACTAATAATCTTATGCATAGTGTGGAGCCTGGCTATAATTG
GAATAATTTTTAAAATAATATTTACAAACAGCCCCGGATGGTTTAATGGATCCATATTTATAATCATGGGGTGGATTATC
ATTTTTAAAATTAAGCCCATTTATAAGGCCCTCAGCGGAAAAGGATTTTTTTGGCTAGTTTTTGGCGGAATCGTATATAC
AATAGGAGGAATAGTATACATATTAAGTAAAAAATTCAATCCAACAATTAACATGAAAATGCATGATGTATTTCATATAT
TAATAATAATCGCATCAGCATCTCACTTTTGGCTTATGCTAAAATACATTTCTAATTTTTAA

Upstream 100 bases:

>100_bases
ATAAATCAAGCAAGATTTAATTTGATCTTGAGAAAAAGCTACAATTAAAGTAAGGTATTATATATTTTTTATAAATAAGT
GATAAAACGGAGGCAAAGCT

Downstream 100 bases:

>100_bases
TTAAATATATTTAAAAGACCTTTCAAATCATTAAAAAGGCCTAAACCAAAAAGAAACAGCCCAAAAAAAATACCAAAGCT
ATAAAAAGAATAAATGGTTT

Product: hemolysin III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MLRENKLKNYSLSDVNTSKIPKNELFSSISHLFGIILSIIGTTILVTISTLKKKDLHVVVFLIYGFSMTLLYVMSTLYHI
FPKGSKIKKIFRKFDHISIFILIAGTYTPACAILVPNKSGLIILCIVWSLAIIGIIFKIIFTNSPGWFNGSIFIIMGWII
IFKIKPIYKALSGKGFFWLVFGGIVYTIGGIVYILSKKFNPTINMKMHDVFHILIIIASASHFWLMLKYISNF

Sequences:

>Translated_233_residues
MLRENKLKNYSLSDVNTSKIPKNELFSSISHLFGIILSIIGTTILVTISTLKKKDLHVVVFLIYGFSMTLLYVMSTLYHI
FPKGSKIKKIFRKFDHISIFILIAGTYTPACAILVPNKSGLIILCIVWSLAIIGIIFKIIFTNSPGWFNGSIFIIMGWII
IFKIKPIYKALSGKGFFWLVFGGIVYTIGGIVYILSKKFNPTINMKMHDVFHILIIIASASHFWLMLKYISNF
>Mature_233_residues
MLRENKLKNYSLSDVNTSKIPKNELFSSISHLFGIILSIIGTTILVTISTLKKKDLHVVVFLIYGFSMTLLYVMSTLYHI
FPKGSKIKKIFRKFDHISIFILIAGTYTPACAILVPNKSGLIILCIVWSLAIIGIIFKIIFTNSPGWFNGSIFIIMGWII
IFKIKPIYKALSGKGFFWLVFGGIVYTIGGIVYILSKKFNPTINMKMHDVFHILIIIASASHFWLMLKYISNF

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family

Homologues:

Organism=Escherichia coli, GI1789266, Length=229, Percent_Identity=31.4410480349345, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y117_BORBU (O51144)

Other databases:

- EMBL:   AE000783
- PIR:   E70114
- RefSeq:   NP_212251.1
- EnsemblBacteria:   EBBORT00000008541
- GeneID:   1194953
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0117
- NMPDR:   fig|224326.1.peg.501
- TIGR:   BB_0117
- GeneTree:   EBGT00050000006859
- HOGENOM:   HBG717325
- OMA:   YMGHHEI
- PhylomeDB:   O51144
- ProtClustDB:   CLSK507366
- BioCyc:   BBUR224326:BB_0117-MONOMER
- GO:   GO:0019835
- InterPro:   IPR004254
- InterPro:   IPR005744
- PANTHER:   PTHR20855
- PANTHER:   PTHR20855:SF3
- TIGRFAMs:   TIGR01065

Pfam domain/function: PF03006 HlyIII

EC number: NA

Molecular weight: Translated: 26455; Mature: 26455

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbe8a218)-; HASH(0x403a125c)-; HASH(0xc0348d0)-; HASH(0xbebe9fc)-; HASH(0xb831b78)-; HASH(0x403b0454)-; HASH(0xaddac00)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRENKLKNYSLSDVNTSKIPKNELFSSISHLFGIILSIIGTTILVTISTLKKKDLHVVV
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
FLIYGFSMTLLYVMSTLYHIFPKGSKIKKIFRKFDHISIFILIAGTYTPACAILVPNKSG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEECCCC
LIILCIVWSLAIIGIIFKIIFTNSPGWFNGSIFIIMGWIIIFKIKPIYKALSGKGFFWLV
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHH
FGGIVYTIGGIVYILSKKFNPTINMKMHDVFHILIIIASASHFWLMLKYISNF
HHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCHHHHHHHHHHHCH
>Mature Secondary Structure
MLRENKLKNYSLSDVNTSKIPKNELFSSISHLFGIILSIIGTTILVTISTLKKKDLHVVV
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
FLIYGFSMTLLYVMSTLYHIFPKGSKIKKIFRKFDHISIFILIAGTYTPACAILVPNKSG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEECCCC
LIILCIVWSLAIIGIIFKIIFTNSPGWFNGSIFIIMGWIIIFKIKPIYKALSGKGFFWLV
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHH
FGGIVYTIGGIVYILSKKFNPTINMKMHDVFHILIIIASASHFWLMLKYISNF
HHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685