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The map label for this gene is rpsF

Identifier: 15594461

GI number: 15594461

Start: 112350

End: 112769

Strand: Reverse

Name: rpsF

Synonym: BB0115

Alternate gene names: 15594461

Gene position: 112769-112350 (Counterclockwise)

Preceding gene: 15594462

Following gene: 15594460

Centisome position: 12.38

GC content: 29.29

Gene sequence:

>420_bases
ATGATTAAAAGATATGAGGCATGTTTTTTGTTTAAAAGTGAAGAAATTGAATATAAGGGTTCTTTAGAAGAGGTTAAAAA
ATCTTTAGAGTTTTTTGGTGCAACTGATGTTGTTAGCAATTTTATTGGAGAGAGAGCCTTAGAATATCCTATTAAAAAGC
AGGCTAGAGGTCGTTATGAAATAATAGAGTTTAGTATGGAAGGCAATAATTTAAAAGAATTTGAATCAAGGCTTAAGTTA
ATTAGAAACTTGCTTAGGTATATGATTTTGGTGAAAATAGTTAGAAAGATCAATACTAAAAAAATCAAAAGAAGAAATTT
TAGAGAATTTAGAGACAATATTGACAAAGACAGTCTTAAAGGTGCCTCTAAAGTTGAAACACCAACAGGTCCTGAAAGCA
CAGATATTCAGGAAAAATAA

Upstream 100 bases:

>100_bases
AAAATTTTTATTGTTGAAAAAAATTAGTCTCTTTTATATACTAACTAAGTAACCTTTGTTGCATATTTTGCAATGCGATA
GACCATAAGGAGTTTTAGTA

Downstream 100 bases:

>100_bases
GAGGGTTTTTAATGGCTGATATTAATTCATTAGTATTGTCTGGTAGGCTTACAAGAGATTCTGAGCTTTCTTATACAGAA
AGTGGCATGGCTGTTCTTAG

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MIKRYEACFLFKSEEIEYKGSLEEVKKSLEFFGATDVVSNFIGERALEYPIKKQARGRYEIIEFSMEGNNLKEFESRLKL
IRNLLRYMILVKIVRKINTKKIKRRNFREFRDNIDKDSLKGASKVETPTGPESTDIQEK

Sequences:

>Translated_139_residues
MIKRYEACFLFKSEEIEYKGSLEEVKKSLEFFGATDVVSNFIGERALEYPIKKQARGRYEIIEFSMEGNNLKEFESRLKL
IRNLLRYMILVKIVRKINTKKIKRRNFREFRDNIDKDSLKGASKVETPTGPESTDIQEK
>Mature_139_residues
MIKRYEACFLFKSEEIEYKGSLEEVKKSLEFFGATDVVSNFIGERALEYPIKKQARGRYEIIEFSMEGNNLKEFESRLKL
IRNLLRYMILVKIVRKINTKKIKRRNFREFRDNIDKDSLKGASKVETPTGPESTDIQEK

Specific function: Binds together with S18 to 16S ribosomal RNA

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6_BORBU (O51142)

Other databases:

- EMBL:   AE000783
- PIR:   C70114
- RefSeq:   NP_212249.1
- ProteinModelPortal:   O51142
- SMR:   O51142
- EnsemblBacteria:   EBBORT00000008929
- GeneID:   1194951
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0115
- NMPDR:   fig|224326.1.peg.499
- TIGR:   BB_0115
- GeneTree:   EBGT00050000006977
- HOGENOM:   HBG354167
- OMA:   RYEIIEF
- ProtClustDB:   PRK00453
- BioCyc:   BBUR224326:BB_0115-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00360
- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717
- Gene3D:   G3DSA:3.30.70.60
- TIGRFAMs:   TIGR00166

Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6

EC number: NA

Molecular weight: Translated: 16437; Mature: 16437

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRYEACFLFKSEEIEYKGSLEEVKKSLEFFGATDVVSNFIGERALEYPIKKQARGRYE
CCCCHHHHHEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCEE
IIEFSMEGNNLKEFESRLKLIRNLLRYMILVKIVRKINTKKIKRRNFREFRDNIDKDSLK
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
GASKVETPTGPESTDIQEK
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIKRYEACFLFKSEEIEYKGSLEEVKKSLEFFGATDVVSNFIGERALEYPIKKQARGRYE
CCCCHHHHHEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCEE
IIEFSMEGNNLKEFESRLKLIRNLLRYMILVKIVRKINTKKIKRRNFREFRDNIDKDSLK
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
GASKVETPTGPESTDIQEK
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685