Click here to switch to the map view.

The map label for this gene is ybbD [H]

Identifier: 15594348

GI number: 15594348

Start: 768

End: 1796

Strand: Reverse

Name: ybbD [H]

Synonym: BB0002

Alternate gene names: 15594348

Gene position: 1796-768 (Counterclockwise)

Preceding gene: 15594349

Following gene: NA

Centisome position: 0.2

GC content: 27.79

Gene sequence:

>1029_bases
ATGGACTTTTTAAAAACCTTTTCTTTTTTGTTTTTTAGCTTTTTTTGCTTAAATTTAATTGCGATAGAATCTTTACCAGA
AATAGATTATGAATATTTTAACAAGGATAAATCAGATCTTGTAGATTTGATAAAATTCTTAGGTGAATTAGATTTTCAAA
CTATTTTAAAAGATAGAAATTTATTTATTGGGATTAGAAATTTAACAAATTTTAAGAATGTTCAAGAGCTTAATATCGAT
GATATTAATAGAATAAAAAAGATTAATCCAATTGGTATAATTTTATTTAGAGAAAATTTAAAAGATGCGGAGCAGACAAA
GGGATTGATTAATGCAATAAAGAGTCATATTGGACATGATATTTTTATTGCTATTGATGAAGAGGGGGGAATAGTTAGTA
GAGCTAGTGAAAATAAAAAAATGGGGGTTTATAATTTTCCGGCCATGGAGCATGTGGGGGGTGTTAAAGATTTGCATCTT
ATTTATAAAATTGGTGAAGTTCTTGCTAAACAATTGCGTAGATTGGGTATTAATTTAAATATGGCTCCAGTTGCCGATAT
AAAATTTGCACCACATACTCCTTTATTAAATAGGACATTTGGAGGATATTCCGCTTATAATATTGGACTTATGGTAGAAG
CTTTTATTGATGGTATGCAGAATAATGGAGTATTTTCGGCAATCAAACATTTTCCTGGATTAGGGGGAACAACTACAGAT
ACACATAAATATTTAGCATTTTTGCCTTATAGTAAAAGCTTTTTAATGTTAAATAATTTTGTTCCATTTGTTTTTGGTAG
AGCTGCTAAATTTATTATGATTGGTCATGTAAATGTTCCTAAAATTTCTAAAGATATAACTAGCATGTCTAAAAGTATTG
TTAATATTATAAGGGAAAATTTAAATATTACTAGTATTATGATGACAGATTCTTATGATATGGGAGCAATTACAAGAAGT
TTTTCTAATATTGAAAATGCTATTAAAAAGTCTTTGAGTTCGGGTGTCAATATAGTACTCATTCCTTAG

Upstream 100 bases:

>100_bases
GATATTGTTGTAAAAAGGGGATCGATAATTCTGCTAAGAATTTTAGCGCTCTTCCTGATTTGTTATCAAAAGATTATGGT
TTGCTTTGTGGGCTATATAA

Downstream 100 bases:

>100_bases
TGAAATTGTTTTGAAAATTTGTTTTTGGTCTTTTTACAATTTGTGTTAAATAATTTATACCATAAAAAAAGTTCTATAAT
AAAAAAAGGATTATATAAAT

Product: beta-N-acetylhexosaminidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MDFLKTFSFLFFSFFCLNLIAIESLPEIDYEYFNKDKSDLVDLIKFLGELDFQTILKDRNLFIGIRNLTNFKNVQELNID
DINRIKKINPIGIILFRENLKDAEQTKGLINAIKSHIGHDIFIAIDEEGGIVSRASENKKMGVYNFPAMEHVGGVKDLHL
IYKIGEVLAKQLRRLGINLNMAPVADIKFAPHTPLLNRTFGGYSAYNIGLMVEAFIDGMQNNGVFSAIKHFPGLGGTTTD
THKYLAFLPYSKSFLMLNNFVPFVFGRAAKFIMIGHVNVPKISKDITSMSKSIVNIIRENLNITSIMMTDSYDMGAITRS
FSNIENAIKKSLSSGVNIVLIP

Sequences:

>Translated_342_residues
MDFLKTFSFLFFSFFCLNLIAIESLPEIDYEYFNKDKSDLVDLIKFLGELDFQTILKDRNLFIGIRNLTNFKNVQELNID
DINRIKKINPIGIILFRENLKDAEQTKGLINAIKSHIGHDIFIAIDEEGGIVSRASENKKMGVYNFPAMEHVGGVKDLHL
IYKIGEVLAKQLRRLGINLNMAPVADIKFAPHTPLLNRTFGGYSAYNIGLMVEAFIDGMQNNGVFSAIKHFPGLGGTTTD
THKYLAFLPYSKSFLMLNNFVPFVFGRAAKFIMIGHVNVPKISKDITSMSKSIVNIIRENLNITSIMMTDSYDMGAITRS
FSNIENAIKKSLSSGVNIVLIP
>Mature_342_residues
MDFLKTFSFLFFSFFCLNLIAIESLPEIDYEYFNKDKSDLVDLIKFLGELDFQTILKDRNLFIGIRNLTNFKNVQELNID
DINRIKKINPIGIILFRENLKDAEQTKGLINAIKSHIGHDIFIAIDEEGGIVSRASENKKMGVYNFPAMEHVGGVKDLHL
IYKIGEVLAKQLRRLGINLNMAPVADIKFAPHTPLLNRTFGGYSAYNIGLMVEAFIDGMQNNGVFSAIKHFPGLGGTTTD
THKYLAFLPYSKSFLMLNNFVPFVFGRAAKFIMIGHVNVPKISKDITSMSKSIVNIIRENLNITSIMMTDSYDMGAITRS
FSNIENAIKKSLSSGVNIVLIP

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=281, Percent_Identity=24.5551601423488, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 38465; Mature: 38465

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFLKTFSFLFFSFFCLNLIAIESLPEIDYEYFNKDKSDLVDLIKFLGELDFQTILKDRN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCC
LFIGIRNLTNFKNVQELNIDDINRIKKINPIGIILFRENLKDAEQTKGLINAIKSHIGHD
EEEEECCCCCCCCHHHCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCE
IFIAIDEEGGIVSRASENKKMGVYNFPAMEHVGGVKDLHLIYKIGEVLAKQLRRLGINLN
EEEEECCCCCEEECCCCCCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
MAPVADIKFAPHTPLLNRTFGGYSAYNIGLMVEAFIDGMQNNGVFSAIKHFPGLGGTTTD
CCCCCCEEECCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC
THKYLAFLPYSKSFLMLNNFVPFVFGRAAKFIMIGHVNVPKISKDITSMSKSIVNIIREN
CCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
LNITSIMMTDSYDMGAITRSFSNIENAIKKSLSSGVNIVLIP
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
>Mature Secondary Structure
MDFLKTFSFLFFSFFCLNLIAIESLPEIDYEYFNKDKSDLVDLIKFLGELDFQTILKDRN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCC
LFIGIRNLTNFKNVQELNIDDINRIKKINPIGIILFRENLKDAEQTKGLINAIKSHIGHD
EEEEECCCCCCCCHHHCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCE
IFIAIDEEGGIVSRASENKKMGVYNFPAMEHVGGVKDLHLIYKIGEVLAKQLRRLGINLN
EEEEECCCCCEEECCCCCCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
MAPVADIKFAPHTPLLNRTFGGYSAYNIGLMVEAFIDGMQNNGVFSAIKHFPGLGGTTTD
CCCCCCEEECCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC
THKYLAFLPYSKSFLMLNNFVPFVFGRAAKFIMIGHVNVPKISKDITSMSKSIVNIIREN
CCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
LNITSIMMTDSYDMGAITRSFSNIENAIKKSLSSGVNIVLIP
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]