Click here to switch to the map view.

The map label for this gene is yxeQ

Identifier: 255767840

GI number: 255767840

Start: 4055536

End: 4056873

Strand: Reverse

Name: yxeQ

Synonym: BSU39460

Alternate gene names: 255767840

Gene position: 4056873-4055536 (Counterclockwise)

Preceding gene: 255767841

Following gene: 16080996

Centisome position: 96.23

GC content: 50.6

Gene sequence:

>1338_bases
ATGAGCAAACAAGGGCTGACAGCAGGTCTTGCAGAGGCTGTGAGAACGTCACAACCTGAGCATTCAGTTGACGCGATTCA
CGAAGCAAAAAAGGGATTACTTGATTTTACTGCCGCTTCATTCGCAGGAAGAGAAGATAAAGGAATTCAAAAGCTCCTCC
GTCTGATAGAGGATGAAGGAGGCCGGCCCCTTGTTCCTGTTATCGGACAGGGCAAAAAGGCCGCGCCATTACAATCCGCG
ATGCTCAATGGATTTATCGCCCATGCATTGGATTTTGATGATGTCCACTCCGATGTAAGAGGACACCCCAGTGCAGTCAT
CGTACCGGCCCTTATTGCTTCTGCCGCTCGCGGACATGACGAGCGGCTTCTTGGCGCTTATGTTGTTGGTGTTGAAGTGA
TGGCACGGCTGGGAGAATCAATTGGCAGCCGCCACTATGAGAAGGGCTGGCATAATACAGGTACGCTTGGTGCCATCGCT
GCTGCCTGCGCCGTAGGTTATGCTGAGGAGCTGACTCAGGAAGAGTTGGAAAAAGCAATTGGTTTTGCGGCTACGCAATC
TGCTGGGATGAGGGTGCAATTTGGAACAGAAATGAAACCGCTGCACGCCGGTTTGGCGGCTCAGGCTGGCTTGCTGGCCG
TTAAGCTGGCCCAATCAGAATTTGGCGGGTCCCGCACGGCACTTGATGGAGAAACTGGTTTCTTCAGTCTGTACGGTGAC
GTTGAGAAAGCACAACACACTTTGCTAAACGATTGGGGGGCACCGTGGAGAATTGTGCAGCCGGGTCTATGGTTTAAAAT
CTATCCATTTTGTTCCGCGGCACACCATGCTGCAGATGCGGTACGACAGCTTATCTCCGAAGAAACCATTTCTGCTGCCA
ATACCGAACGTATTGAAGTGATATTTCCGCCAGGCGGAGATGCTGCATTGACGGAAAGATCTCCAAAAGCTGGAGAGGAA
GGCCGTTTCAGCGTTGAATATGTGATTGCTCTTGCTTTGCATGGACACGGCCTGACCGTTGAACATTTCAGCAGCCAGCC
GATCCCAAACGGGGTTCAAACGACAATGGGGCGAATTCAGCGCGTATATGACAATGCTATTCAGCCGGCTCCTCATGCCG
TTCCAAAAGGCCGTTTCACGATTGTCCGGGCCTATTTATCAGACGGCCGGATTTGCGAAGCGCGTGTGGACTGCCCAAAA
GGGGCACCAGGAAATGAGCTGTCTGAAGAAGACATAATAGAAAAATTGACATTAACGGTCCCGCAAGAAAAAGCGCGACG
CATTATAACAGCCGTTGAAAAAGCCGATATAAAAGAATTTTTAGCTCATATTGAATAA

Upstream 100 bases:

>100_bases
AGGAGTGGCATCATCCGGCCTTTACACTGGATGAAGAAGCCCTTACGGTTGCCTCTCAATACTTTGCGGAGCTGGCGGTT
ATTGTATTGGAGACCATCAA

Downstream 100 bases:

>100_bases
GATCAACTCTATTCGGTGATTTCAGATGATATGATAAAACCAATCATACGTTTGAAAAAGGAGAAAACCATGACGGTGAA
TGACGCGGTTGTATTCATTT

Product: catabolic enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MSKQGLTAGLAEAVRTSQPEHSVDAIHEAKKGLLDFTAASFAGREDKGIQKLLRLIEDEGGRPLVPVIGQGKKAAPLQSA
MLNGFIAHALDFDDVHSDVRGHPSAVIVPALIASAARGHDERLLGAYVVGVEVMARLGESIGSRHYEKGWHNTGTLGAIA
AACAVGYAEELTQEELEKAIGFAATQSAGMRVQFGTEMKPLHAGLAAQAGLLAVKLAQSEFGGSRTALDGETGFFSLYGD
VEKAQHTLLNDWGAPWRIVQPGLWFKIYPFCSAAHHAADAVRQLISEETISAANTERIEVIFPPGGDAALTERSPKAGEE
GRFSVEYVIALALHGHGLTVEHFSSQPIPNGVQTTMGRIQRVYDNAIQPAPHAVPKGRFTIVRAYLSDGRICEARVDCPK
GAPGNELSEEDIIEKLTLTVPQEKARRIITAVEKADIKEFLAHIE

Sequences:

>Translated_445_residues
MSKQGLTAGLAEAVRTSQPEHSVDAIHEAKKGLLDFTAASFAGREDKGIQKLLRLIEDEGGRPLVPVIGQGKKAAPLQSA
MLNGFIAHALDFDDVHSDVRGHPSAVIVPALIASAARGHDERLLGAYVVGVEVMARLGESIGSRHYEKGWHNTGTLGAIA
AACAVGYAEELTQEELEKAIGFAATQSAGMRVQFGTEMKPLHAGLAAQAGLLAVKLAQSEFGGSRTALDGETGFFSLYGD
VEKAQHTLLNDWGAPWRIVQPGLWFKIYPFCSAAHHAADAVRQLISEETISAANTERIEVIFPPGGDAALTERSPKAGEE
GRFSVEYVIALALHGHGLTVEHFSSQPIPNGVQTTMGRIQRVYDNAIQPAPHAVPKGRFTIVRAYLSDGRICEARVDCPK
GAPGNELSEEDIIEKLTLTVPQEKARRIITAVEKADIKEFLAHIE
>Mature_444_residues
SKQGLTAGLAEAVRTSQPEHSVDAIHEAKKGLLDFTAASFAGREDKGIQKLLRLIEDEGGRPLVPVIGQGKKAAPLQSAM
LNGFIAHALDFDDVHSDVRGHPSAVIVPALIASAARGHDERLLGAYVVGVEVMARLGESIGSRHYEKGWHNTGTLGAIAA
ACAVGYAEELTQEELEKAIGFAATQSAGMRVQFGTEMKPLHAGLAAQAGLLAVKLAQSEFGGSRTALDGETGFFSLYGDV
EKAQHTLLNDWGAPWRIVQPGLWFKIYPFCSAAHHAADAVRQLISEETISAANTERIEVIFPPGGDAALTERSPKAGEEG
RFSVEYVIALALHGHGLTVEHFSSQPIPNGVQTTMGRIQRVYDNAIQPAPHAVPKGRFTIVRAYLSDGRICEARVDCPKG
APGNELSEEDIIEKLTLTVPQEKARRIITAVEKADIKEFLAHIE

Specific function: Unknown

COG id: COG2079

COG function: function code R; Uncharacterized protein involved in propionate catabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prpD family

Homologues:

Organism=Homo sapiens, GI310129732, Length=432, Percent_Identity=25.9259259259259, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI310110533, Length=432, Percent_Identity=25.9259259259259, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI310123058, Length=408, Percent_Identity=25.9803921568627, Blast_Score=96, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXEQ_BACSU (P54956)

Other databases:

- EMBL:   D45912
- EMBL:   AL009126
- PIR:   C70076
- RefSeq:   NP_391825.2
- ProteinModelPortal:   P54956
- SMR:   P54956
- EnsemblBacteria:   EBBACT00000002437
- GeneID:   938528
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU39460
- NMPDR:   fig|224308.1.peg.3951
- GenoList:   BSU39460
- GeneTree:   EBGT00050000001214
- HOGENOM:   HBG662932
- ProtClustDB:   CLSK888153
- BioCyc:   BSUB:BSU39460-MONOMER
- InterPro:   IPR005656
- PANTHER:   PTHR16943

Pfam domain/function: PF03972 MmgE_PrpD; SSF103378 MmgE_PrpD

EC number: NA

Molecular weight: Translated: 47691; Mature: 47559

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQGLTAGLAEAVRTSQPEHSVDAIHEAKKGLLDFTAASFAGREDKGIQKLLRLIEDEG
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
GRPLVPVIGQGKKAAPLQSAMLNGFIAHALDFDDVHSDVRGHPSAVIVPALIASAARGHD
CCEEEHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
ERLLGAYVVGVEVMARLGESIGSRHYEKGWHNTGTLGAIAAACAVGYAEELTQEELEKAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GFAATQSAGMRVQFGTEMKPLHAGLAAQAGLLAVKLAQSEFGGSRTALDGETGFFSLYGD
HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHEEEHHHHCCCCCCCCCCCCCEEEECCC
VEKAQHTLLNDWGAPWRIVQPGLWFKIYPFCSAAHHAADAVRQLISEETISAANTERIEV
HHHHHHHHHHCCCCCCEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
IFPPGGDAALTERSPKAGEEGRFSVEYVIALALHGHGLTVEHFSSQPIPNGVQTTMGRIQ
EECCCCCCCCCCCCCCCCCCCCEEHEEEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHH
RVYDNAIQPAPHAVPKGRFTIVRAYLSDGRICEARVDCPKGAPGNELSEEDIIEKLTLTV
HHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCC
PQEKARRIITAVEKADIKEFLAHIE
CHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKQGLTAGLAEAVRTSQPEHSVDAIHEAKKGLLDFTAASFAGREDKGIQKLLRLIEDEG
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
GRPLVPVIGQGKKAAPLQSAMLNGFIAHALDFDDVHSDVRGHPSAVIVPALIASAARGHD
CCEEEHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
ERLLGAYVVGVEVMARLGESIGSRHYEKGWHNTGTLGAIAAACAVGYAEELTQEELEKAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GFAATQSAGMRVQFGTEMKPLHAGLAAQAGLLAVKLAQSEFGGSRTALDGETGFFSLYGD
HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHEEEHHHHCCCCCCCCCCCCCEEEECCC
VEKAQHTLLNDWGAPWRIVQPGLWFKIYPFCSAAHHAADAVRQLISEETISAANTERIEV
HHHHHHHHHHCCCCCCEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
IFPPGGDAALTERSPKAGEEGRFSVEYVIALALHGHGLTVEHFSSQPIPNGVQTTMGRIQ
EECCCCCCCCCCCCCCCCCCCCEEHEEEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHH
RVYDNAIQPAPHAVPKGRFTIVRAYLSDGRICEARVDCPKGAPGNELSEEDIIEKLTLTV
HHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCC
PQEKARRIITAVEKADIKEFLAHIE
CHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8867804; 9384377