Click here to switch to the map view.

The map label for this gene is ywdD

Identifier: 255767802

GI number: 255767802

Start: 3899853

End: 3900488

Strand: Reverse

Name: ywdD

Synonym: BSU38000

Alternate gene names: 255767802

Gene position: 3900488-3899853 (Counterclockwise)

Preceding gene: 255767803

Following gene: 16080850

Centisome position: 92.52

GC content: 42.14

Gene sequence:

>636_bases
ATGGATAAAGAAACATATGTATCCGAAATCAAAAGCGGGCTTAAAGGGCTTCCTGAGGGTGAGGCGATGATAGAAGAGAT
TGAGAGCCATATTGAACATCATCTGTTTCGCTCTTTTCAGGAAGGAAAGAGTGAGGAGGAAGCTATGCAGACTTTATTGC
AGGCGTTTGGAACACCAACTGACATTGTTTCTTCGTTTAAGAAAATACAGCCAGTAACGTTTCGTGCGTTTTTGATGTTC
CATCTTTTCTGTAACAGTGCCCTATTCGCTGTCGGCATTGCGATTACAATAATGCATGTATGGCTTGAATCACCGTTTGT
TCAAGCAGTATGGAAAGGCATTTCTGTTTCTGTTTGGCTGATCTTAGCTGCATATATGATCTACTGGGTGCTGATTGGGT
ATCAAGGCGTGAAGGAGTTTGGAAAACGCGGAGAAAAGCTTGTTCTACATACGATTCTGATCTCAATGGTGCCAAACGTC
ATTTTTATGCTTGTTTTTCTATTCAATGTAATTCCTGCTGCGCTGTTTCAATCCTTGTTGACACCTTGGTTTGTTGGAAC
TTGTGCTTTTGCAACGCTGTTATTTCCGTTATTTGGCCGAATGGGCTGTTATATTGGCAGGCGTCAGCTTGTCTGA

Upstream 100 bases:

>100_bases
CGGATTACAGACGAGGGCAAAGAAGTGCTGGCGGAACGCACGAAGGAATGGAGCGTATTTTCAGCCATGATGGACCGAAT
ACTGAAGTGGAGCGGACAAA

Downstream 100 bases:

>100_bases
TTTTTTAGGTATATACATAGAATTTCTATGTAAAGGAGGTGTATGTCGTGAGGATTAGCTCTTGTTTATATGGTTTTGTA
GCTCATGGGGCAGTATTTTT

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MDKETYVSEIKSGLKGLPEGEAMIEEIESHIEHHLFRSFQEGKSEEEAMQTLLQAFGTPTDIVSSFKKIQPVTFRAFLMF
HLFCNSALFAVGIAITIMHVWLESPFVQAVWKGISVSVWLILAAYMIYWVLIGYQGVKEFGKRGEKLVLHTILISMVPNV
IFMLVFLFNVIPAALFQSLLTPWFVGTCAFATLLFPLFGRMGCYIGRRQLV

Sequences:

>Translated_211_residues
MDKETYVSEIKSGLKGLPEGEAMIEEIESHIEHHLFRSFQEGKSEEEAMQTLLQAFGTPTDIVSSFKKIQPVTFRAFLMF
HLFCNSALFAVGIAITIMHVWLESPFVQAVWKGISVSVWLILAAYMIYWVLIGYQGVKEFGKRGEKLVLHTILISMVPNV
IFMLVFLFNVIPAALFQSLLTPWFVGTCAFATLLFPLFGRMGCYIGRRQLV
>Mature_211_residues
MDKETYVSEIKSGLKGLPEGEAMIEEIESHIEHHLFRSFQEGKSEEEAMQTLLQAFGTPTDIVSSFKKIQPVTFRAFLMF
HLFCNSALFAVGIAITIMHVWLESPFVQAVWKGISVSVWLILAAYMIYWVLIGYQGVKEFGKRGEKLVLHTILISMVPNV
IFMLVFLFNVIPAALFQSLLTPWFVGTCAFATLLFPLFGRMGCYIGRRQLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWDD_BACSU (P39612)

Other databases:

- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S39709
- RefSeq:   NP_391679.2
- EnsemblBacteria:   EBBACT00000003600
- GeneID:   937267
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38000
- NMPDR:   fig|224308.1.peg.3805
- GenoList:   BSU38000
- GeneTree:   EBGT00050000001872
- HOGENOM:   HBG338449
- ProtClustDB:   CLSK888090
- BioCyc:   BSUB:BSU38000-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23936; Mature: 23936

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1323b1c0)-; HASH(0x12d969b8)-; HASH(0x12f89538)-; HASH(0xf32cc70)-;

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKETYVSEIKSGLKGLPEGEAMIEEIESHIEHHLFRSFQEGKSEEEAMQTLLQAFGTPT
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
DIVSSFKKIQPVTFRAFLMFHLFCNSALFAVGIAITIMHVWLESPFVQAVWKGISVSVWL
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
ILAAYMIYWVLIGYQGVKEFGKRGEKLVLHTILISMVPNVIFMLVFLFNVIPAALFQSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TPWFVGTCAFATLLFPLFGRMGCYIGRRQLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MDKETYVSEIKSGLKGLPEGEAMIEEIESHIEHHLFRSFQEGKSEEEAMQTLLQAFGTPT
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
DIVSSFKKIQPVTFRAFLMFHLFCNSALFAVGIAITIMHVWLESPFVQAVWKGISVSVWL
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
ILAAYMIYWVLIGYQGVKEFGKRGEKLVLHTILISMVPNVIFMLVFLFNVIPAALFQSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TPWFVGTCAFATLLFPLFGRMGCYIGRRQLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377