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The map label for this gene is gerBA

Identifier: 255767773

GI number: 255767773

Start: 3688812

End: 3690263

Strand: Direct

Name: gerBA

Synonym: BSU35800

Alternate gene names: 255767773

Gene position: 3688812-3690263 (Clockwise)

Preceding gene: 16080630

Following gene: 255767774

Centisome position: 87.5

GC content: 45.52

Gene sequence:

>1452_bases
ATGCAAATCGACTCTGATCTCCAGAACAATTTAGACACACTGAAAAAAACATTGGGACAAAACGACGATATGATGTTTTA
TACATTTGCTTTCGGAGATAGCAGACAAAAGGCGTGTTTACTGTATATTGACGGTCTGACAGAGAATAAAATGCTGGCGC
AATACGTCATTTCTCCTTTACAAAAAGAGGCGTTGGCCCATAAGGAATGCTCGATTGAAGACTTATCCGCCTTTTTTTTC
GGCTTTCACCACAGCGTTGTTTCTACAATGAAAGAAATAGAGCAGCTCGTTTTTTCAGGGCAAGCCATTTTGCTCGCTGA
TGGCTATCGCGGAGGATTAGCTTTCGACACAAAGTCAGTCGCAACACGCAGTCTTGATGAACCCTCCTCCGAAGTCGTGG
AACGCGGCCCTAAAATAGGATTTATTGAAAAGCTGCGGACAAACACGGCGCTTTTGCGTGAACGGACGAGTGATCCTAAT
CTCGTCATCAAAGAAATGACACTCGGAAAAAGGACCAAAAAGAAAATCGCTGTCGCTTATATTCAGGATATCGCCCCAGA
TTATGTCGTCAAAGAAGTGTTTAAAAGGCTGAAATCAGTCAATATAGATAATTTGCCGGAATCGGGGACGCTTGAACAGC
TGATTGAAGACGAACCATTTTCAATTTTCCCCACAATATTAAGCACAGAACGACCGGACCGGGTCGAAAGTTCTCTATTA
GAAGGGCGAGTGTCCATATTAGTGGATGGTACGCCGTTTGCTTTGATTGTACCGGCTACGGTTGACGAATTTATTCATTC
GCCCGATGATTACAGCCAGCGCTGGATCCCAATGTCACTTGTACGCCTTCTTCGTTATTCCAGCATCCTGATCACCATTT
ATTTGCCCGGTCTGTATATTTCTCTCGTTTCTTTTCACACCGGGCTATTGCCGACTAGAATGGCCATTTCCATTGCAGGC
AGCAGGCTTAACGTACCATTCCCGCCTTTTGTAGAGGCCTTTATCATGATCTTTACGATCGAATTGATTCGAGAAGCCGG
ATTAAGGCTGCCTAAGCCGATTGGACAGACAATTGGCCTTATCGGCGGCGTTGTCATCGGACAGGCAGCTGTTCAGGCGC
AAATTGTCAGTGCGCTTATGGTCATTGTCGTTTCTGTCACAGCACTGGCATCCTTTACCGTTCCTTCATACGCCTATAAC
TTTCCGCTGCGGATCATTCGGATCGGGGTTATGATAAGTGCAACAGCGCTTGGCATGTACGGCGTTATAATGGTTTATCT
GTTTGTGATCGGCCATCTCATGCGCCTGAAAAGCTTTGGCCAGGATTACATTATCCCGATCATGGCGCAGCCTGGACAGG
ATTTGAAAGACACAGTCATCCGTATTCCCACGATGTTTTTAAAAAGAAGACCGACACGAAACGATCCCGAAGATAACATC
AGACAAAGGTGA

Upstream 100 bases:

>100_bases
AAAAGAAGCTTTGTTTCAGCCTTTTCCTCGATAAGAATAATTCTCCTTTTTTGATACAAATTAATAAAAACCGTCAATAT
GTTTAAGAAGGAGAGAAACT

Downstream 100 bases:

>100_bases
TGGCTATGAGGAAATCAGAGCATAAACTGACATTTATGCAGACGCTCATTATGATCAGCAGCACATTGATTGGTGCCGGG
GTGCTGACCCTTCCCCGCTC

Product: germinant receptor B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MQIDSDLQNNLDTLKKTLGQNDDMMFYTFAFGDSRQKACLLYIDGLTENKMLAQYVISPLQKEALAHKECSIEDLSAFFF
GFHHSVVSTMKEIEQLVFSGQAILLADGYRGGLAFDTKSVATRSLDEPSSEVVERGPKIGFIEKLRTNTALLRERTSDPN
LVIKEMTLGKRTKKKIAVAYIQDIAPDYVVKEVFKRLKSVNIDNLPESGTLEQLIEDEPFSIFPTILSTERPDRVESSLL
EGRVSILVDGTPFALIVPATVDEFIHSPDDYSQRWIPMSLVRLLRYSSILITIYLPGLYISLVSFHTGLLPTRMAISIAG
SRLNVPFPPFVEAFIMIFTIELIREAGLRLPKPIGQTIGLIGGVVIGQAAVQAQIVSALMVIVVSVTALASFTVPSYAYN
FPLRIIRIGVMISATALGMYGVIMVYLFVIGHLMRLKSFGQDYIIPIMAQPGQDLKDTVIRIPTMFLKRRPTRNDPEDNI
RQR

Sequences:

>Translated_483_residues
MQIDSDLQNNLDTLKKTLGQNDDMMFYTFAFGDSRQKACLLYIDGLTENKMLAQYVISPLQKEALAHKECSIEDLSAFFF
GFHHSVVSTMKEIEQLVFSGQAILLADGYRGGLAFDTKSVATRSLDEPSSEVVERGPKIGFIEKLRTNTALLRERTSDPN
LVIKEMTLGKRTKKKIAVAYIQDIAPDYVVKEVFKRLKSVNIDNLPESGTLEQLIEDEPFSIFPTILSTERPDRVESSLL
EGRVSILVDGTPFALIVPATVDEFIHSPDDYSQRWIPMSLVRLLRYSSILITIYLPGLYISLVSFHTGLLPTRMAISIAG
SRLNVPFPPFVEAFIMIFTIELIREAGLRLPKPIGQTIGLIGGVVIGQAAVQAQIVSALMVIVVSVTALASFTVPSYAYN
FPLRIIRIGVMISATALGMYGVIMVYLFVIGHLMRLKSFGQDYIIPIMAQPGQDLKDTVIRIPTMFLKRRPTRNDPEDNI
RQR
>Mature_483_residues
MQIDSDLQNNLDTLKKTLGQNDDMMFYTFAFGDSRQKACLLYIDGLTENKMLAQYVISPLQKEALAHKECSIEDLSAFFF
GFHHSVVSTMKEIEQLVFSGQAILLADGYRGGLAFDTKSVATRSLDEPSSEVVERGPKIGFIEKLRTNTALLRERTSDPN
LVIKEMTLGKRTKKKIAVAYIQDIAPDYVVKEVFKRLKSVNIDNLPESGTLEQLIEDEPFSIFPTILSTERPDRVESSLL
EGRVSILVDGTPFALIVPATVDEFIHSPDDYSQRWIPMSLVRLLRYSSILITIYLPGLYISLVSFHTGLLPTRMAISIAG
SRLNVPFPPFVEAFIMIFTIELIREAGLRLPKPIGQTIGLIGGVVIGQAAVQAQIVSALMVIVVSVTALASFTVPSYAYN
FPLRIIRIGVMISATALGMYGVIMVYLFVIGHLMRLKSFGQDYIIPIMAQPGQDLKDTVIRIPTMFLKRRPTRNDPEDNI
RQR

Specific function: Involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AGFK). Cannot stimulate germination in the absence of gerD and gerK gene products (fructose and glucose receptors respectively)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GERBA_BACSU (P39569)

Other databases:

- EMBL:   L16960
- EMBL:   AL009126
- PIR:   I39855
- RefSeq:   NP_391461.2
- EnsemblBacteria:   EBBACT00000000187
- GeneID:   936814
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35800
- NMPDR:   fig|224308.1.peg.3587
- GenoList:   BSU35800
- GeneTree:   EBGT00070000031745
- HOGENOM:   HBG343112
- ProtClustDB:   CLSK887980
- BioCyc:   BSUB:BSU35800-MONOMER
- InterPro:   IPR004995

Pfam domain/function: PF03323 GerA

EC number: NA

Molecular weight: Translated: 53963; Mature: 53963

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x128540d8)-; HASH(0x12c4ba94)-; HASH(0x125091c8)-; HASH(0x12c59c50)-; HASH(0x12788bbc)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDSDLQNNLDTLKKTLGQNDDMMFYTFAFGDSRQKACLLYIDGLTENKMLAQYVISPL
CCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHH
QKEALAHKECSIEDLSAFFFGFHHSVVSTMKEIEQLVFSGQAILLADGYRGGLAFDTKSV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECHHHH
ATRSLDEPSSEVVERGPKIGFIEKLRTNTALLRERTSDPNLVIKEMTLGKRTKKKIAVAY
HHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHCCHHHHHHHHHHH
IQDIAPDYVVKEVFKRLKSVNIDNLPESGTLEQLIEDEPFSIFPTILSTERPDRVESSLL
HHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEHHHHHCCCCCHHHHHHHH
EGRVSILVDGTPFALIVPATVDEFIHSPDDYSQRWIPMSLVRLLRYSSILITIYLPGLYI
CCCEEEEECCCCEEEEECHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHEEEEEHHHHHH
SLVSFHTGLLPTRMAISIAGSRLNVPFPPFVEAFIMIFTIELIREAGLRLPKPIGQTIGL
HHHHHHHCCCHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
IGGVVIGQAAVQAQIVSALMVIVVSVTALASFTVPSYAYNFPLRIIRIGVMISATALGMY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHH
GVIMVYLFVIGHLMRLKSFGQDYIIPIMAQPGQDLKDTVIRIPTMFLKRRPTRNDPEDNI
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
RQR
CCH
>Mature Secondary Structure
MQIDSDLQNNLDTLKKTLGQNDDMMFYTFAFGDSRQKACLLYIDGLTENKMLAQYVISPL
CCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHH
QKEALAHKECSIEDLSAFFFGFHHSVVSTMKEIEQLVFSGQAILLADGYRGGLAFDTKSV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECHHHH
ATRSLDEPSSEVVERGPKIGFIEKLRTNTALLRERTSDPNLVIKEMTLGKRTKKKIAVAY
HHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHCCHHHHHHHHHHH
IQDIAPDYVVKEVFKRLKSVNIDNLPESGTLEQLIEDEPFSIFPTILSTERPDRVESSLL
HHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEHHHHHCCCCCHHHHHHHH
EGRVSILVDGTPFALIVPATVDEFIHSPDDYSQRWIPMSLVRLLRYSSILITIYLPGLYI
CCCEEEEECCCCEEEEECHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHEEEEEHHHHHH
SLVSFHTGLLPTRMAISIAGSRLNVPFPPFVEAFIMIFTIELIREAGLRLPKPIGQTIGL
HHHHHHHCCCHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
IGGVVIGQAAVQAQIVSALMVIVVSVTALASFTVPSYAYNFPLRIIRIGVMISATALGMY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHH
GVIMVYLFVIGHLMRLKSFGQDYIIPIMAQPGQDLKDTVIRIPTMFLKRRPTRNDPEDNI
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
RQR
CCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8012571; 9384377