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The map label for this gene is nusB

Identifier: 255767541

GI number: 255767541

Start: 2529267

End: 2529662

Strand: Reverse

Name: nusB

Synonym: BSU24320

Alternate gene names: 255767541

Gene position: 2529662-2529267 (Counterclockwise)

Preceding gene: 255767542

Following gene: 16079487

Centisome position: 60.01

GC content: 42.68

Gene sequence:

>396_bases
ATGAAAAGAAGAACAGCAAGAGAAAAAGCTTTGCAGGCACTATTTCAAATTGATGTCAGCGATATTGCAGTGAATGAAGC
CATAGAACACGCACTGGATGAAGAAAAAACAGATCCTTTCTTTGAACAGCTTGTACACGGGGTATTGGAACACCAAGACC
AGCTGGATGAAATGATCTCCAAGCATCTGGTGAATTGGAAGCTCGATCGGATTGCCAATGTTGACCGTGCGATTTTGCGC
CTGGCAGCATATGAAATGGCATATGCCGAAGACATTCCGGTGAATGTCTCCATGAACGAAGCGATTGAGCTGGCAAAACG
GTTTGGTGATGACAAAGCGACAAAGTTTGTAAACGGGGTTCTTTCTAACATTAAATCTGATATTGAACAATCATAG

Upstream 100 bases:

>100_bases
AAAAAAACCTTGATTTCAATATGCGGATACGAAAAAAATATGTTATGATCTCTTTGTGGCTTAACGACAAGCGGATAAAG
AGGATCAAAGGAGAAAGAAA

Downstream 100 bases:

>100_bases
GAGGAAAGAAAATGACTGCAACAATCATCGACGGAAAAGAAACGGCTAGAGAAAAACGCGAACAATTGGCAAAAGAGGTA
GAAGAGCTTAAAAAGCAAGG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTDPFFEQLVHGVLEHQDQLDEMISKHLVNWKLDRIANVDRAILR
LAAYEMAYAEDIPVNVSMNEAIELAKRFGDDKATKFVNGVLSNIKSDIEQS

Sequences:

>Translated_131_residues
MKRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTDPFFEQLVHGVLEHQDQLDEMISKHLVNWKLDRIANVDRAILR
LAAYEMAYAEDIPVNVSMNEAIELAKRFGDDKATKFVNGVLSNIKSDIEQS
>Mature_131_residues
MKRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTDPFFEQLVHGVLEHQDQLDEMISKHLVNWKLDRIANVDRAILR
LAAYEMAYAEDIPVNVSMNEAIELAKRFGDDKATKFVNGVLSNIKSDIEQS

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=120, Percent_Identity=38.3333333333333, Blast_Score=73, Evalue=5e-15,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_BACSU (P54520)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   F69960
- RefSeq:   NP_390312.2
- ProteinModelPortal:   P54520
- SMR:   P54520
- EnsemblBacteria:   EBBACT00000001527
- GeneID:   938606
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU24320
- NMPDR:   fig|224308.1.peg.2436
- GenoList:   BSU24320
- GeneTree:   EBGT00070000032128
- HOGENOM:   HBG734409
- PhylomeDB:   P54520
- ProtClustDB:   PRK00202
- BioCyc:   BSUB:BSU24320-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 14952; Mature: 14952

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTDPFFEQLVHGVLEHQDQLDEMIS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELAKRFGDDKATKFVNGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
LSNIKSDIEQS
HHHHHHHHCCC
>Mature Secondary Structure
MKRRTAREKALQALFQIDVSDIAVNEAIEHALDEEKTDPFFEQLVHGVLEHQDQLDEMIS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELAKRFGDDKATKFVNGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
LSNIKSDIEQS
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377