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The map label for this gene is fliR

Identifier: 255767371

GI number: 255767371

Start: 1705820

End: 1706599

Strand: Direct

Name: fliR

Synonym: BSU16370

Alternate gene names: 255767371

Gene position: 1705820-1706599 (Clockwise)

Preceding gene: 16078699

Following gene: 16078701

Centisome position: 40.46

GC content: 39.23

Gene sequence:

>780_bases
ATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCT
ATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTG
ATAAACCGCCCTCTTTGGAGATAGATGAGCACTATATGCTTTTGGCGTTTAAAGAAGCTTTGGTCGGCCTATGTCTGGGT
TTAATTGCTTATATGATGATTGCCGCAGTGCAGATTGCCGGCTCGTTTATTGATTTTCAAATGGGATTTTCAATAGCAAA
CGTTATTGATCCGCAAACCGGTGCACAAAGTCCGTTGATTGGCCAGTTTATCTATACGATGGCACTTTTGTTTATGCTGA
GTGTCAATGCCCACCATTTGTTGCTGGATGGTATTTACTACAGCTTTCAGTATATTTCAGTTGATCAGGCATTTCCGAAT
TTCGGCGATGAAAAGTTTGCCTATTTTATTGCGAAAAGCTTTAATGCAATGTTTATTATCGCTTTTCAAATGTCAGCGCC
GGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGG
TCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAAT
GTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGTCGGTGTTTCTTAA

Upstream 100 bases:

>100_bases
CTGGCTCTCATTTTTTTTGGTCCGTGGATGCTGTCGACGATTCTTTCATTTACAACAGAGCTGTTTTCTAATTTAAATCG
TTTTGCAGGGTAATGTAGAG

Downstream 100 bases:

>100_bases
TGAAGCTTAGAGTTGACCTGCAGTTTTTTGCGGGAGAGAAGACAGAAAAAGCCACTCCGAAAAAACGGAAGGATACGCGA
AAAAAAGGGCAGGTAGCCAA

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNSIIDLFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLEIDEHYMLLAFKEALVGLCLG
LIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQFIYTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPN
FGDEKFAYFIAKSFNAMFIIAFQMSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRN
VFSLTIETMRNLLALVGVS

Sequences:

>Translated_259_residues
MNSIIDLFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLEIDEHYMLLAFKEALVGLCLG
LIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQFIYTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPN
FGDEKFAYFIAKSFNAMFIIAFQMSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRN
VFSLTIETMRNLLALVGVS
>Mature_259_residues
MNSIIDLFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLEIDEHYMLLAFKEALVGLCLG
LIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQFIYTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPN
FGDEKFAYFIAKSFNAMFIIAFQMSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRN
VFSLTIETMRNLLALVGVS

Specific function: Role in flagellar biosynthesis

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family

Homologues:

Organism=Escherichia coli, GI1788261, Length=235, Percent_Identity=27.6595744680851, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLIR_BACSU (P35537)

Other databases:

- EMBL:   X74122
- EMBL:   AL009126
- EMBL:   M87005
- PIR:   I40401
- RefSeq:   NP_389519.2
- EnsemblBacteria:   EBBACT00000002679
- GeneID:   940130
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU16370
- NMPDR:   fig|224308.1.peg.1640
- GenoList:   BSU16370
- GeneTree:   EBGT00050000002070
- HOGENOM:   HBG488878
- ProtClustDB:   PRK05701
- BioCyc:   BSUB:BSU16370-MONOMER
- InterPro:   IPR006303
- InterPro:   IPR002010
- PRINTS:   PR00953
- TIGRFAMs:   TIGR01400

Pfam domain/function: PF01311 Bac_export_1

EC number: NA

Molecular weight: Translated: 28637; Mature: 28637

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb69c224)-; HASH(0xdcd1f6c)-; HASH(0xf247cb0)-; HASH(0xdcd2158)-; HASH(0xda79170)-; HASH(0xef543cc)-;

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIIDLFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
IDEHYMLLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHH
GQFIYTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFII
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEHHHHCCCCCCHHHHHHHHHHCCEEEEE
AFQMSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRN
EEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VFSLTIETMRNLLALVGVS
HHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MNSIIDLFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
IDEHYMLLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHH
GQFIYTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFII
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEHHHHCCCCCCHHHHHHHHHHCCEEEEE
AFQMSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRN
EEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VFSLTIETMRNLLALVGVS
HHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377