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The map label for this gene is thiV

Identifier: 255767313

GI number: 255767313

Start: 1390439

End: 1391038

Strand: Reverse

Name: thiV

Synonym: BSU13230

Alternate gene names: 255767313

Gene position: 1391038-1390439 (Counterclockwise)

Preceding gene: 16078389

Following gene: 255767312

Centisome position: 33.0

GC content: 47.83

Gene sequence:

>600_bases
ATGAAAAGCTGGAAAGTAAAAGAAATTGTCATCATGTCCGTTATCAGTATCGTATTTGCCGTTGTTTATTTATTATTTAC
ACATTTCGGAAACGTACTTGCAGGTATGTTTGGGCCAATCGCCTATGAACCAATTTACGGCATTTGGTTTATCGTTTCTG
TGATCGCCGCGTACATGATTCGAAAACCGGGTGCGGCGCTCGTTTCTGAAATCATTGCCGCTCTCGTTGAGTGCCTGCTG
GGAAATCCGTCTGGCCCGATGGTCATCGTCATTGGCATTGTTCAAGGGCTCGGGGCTGAGGCTGTATTTCTTGCAACACG
CTGGAAAGCATACTCTCTCCCTGTCCTTATGCTGGCCGGTATGGGGTCTTCAGTAGCCAGCTTTATCTATGATCTCTTTG
TTTCTGGCTATGCAGCCTATTCACCAGGTTATCTGCTCATTATGCTTGTGATCCGCCTCATTTCCGGCGCGCTTTTGGCG
GGGCTTCTCGGAAAAGCTGTCAGCGACTCTCTCGCTTATACAGGTGTGTTAAACGGAATGGCACTCGGAAAGGAACTGAA
AAAGAAACGGAAGCGGGCGTCAGAACATGCAAGCCTTTGA

Upstream 100 bases:

>100_bases
GCCGTTTTCCGCATGGCTGAGCAGCAAACAAACCACATCACCATGACTGTGAATCTTTCGGCTAACAGTCCATCAAGAAA
AAACAGAAAGCAGGGATAAC

Downstream 100 bases:

>100_bases
TGAGCTTCTGACGGTTGAGCAGCTCAGCTTCTCTTATGAAGAAGACGAGAAACCGGTTTTTCAAGACATTTCGTTTGAGC
TTCAAAAAGGAGAATGTGTT

Product: thiamine transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MKSWKVKEIVIMSVISIVFAVVYLLFTHFGNVLAGMFGPIAYEPIYGIWFIVSVIAAYMIRKPGAALVSEIIAALVECLL
GNPSGPMVIVIGIVQGLGAEAVFLATRWKAYSLPVLMLAGMGSSVASFIYDLFVSGYAAYSPGYLLIMLVIRLISGALLA
GLLGKAVSDSLAYTGVLNGMALGKELKKKRKRASEHASL

Sequences:

>Translated_199_residues
MKSWKVKEIVIMSVISIVFAVVYLLFTHFGNVLAGMFGPIAYEPIYGIWFIVSVIAAYMIRKPGAALVSEIIAALVECLL
GNPSGPMVIVIGIVQGLGAEAVFLATRWKAYSLPVLMLAGMGSSVASFIYDLFVSGYAAYSPGYLLIMLVIRLISGALLA
GLLGKAVSDSLAYTGVLNGMALGKELKKKRKRASEHASL
>Mature_199_residues
MKSWKVKEIVIMSVISIVFAVVYLLFTHFGNVLAGMFGPIAYEPIYGIWFIVSVIAAYMIRKPGAALVSEIIAALVECLL
GNPSGPMVIVIGIVQGLGAEAVFLATRWKAYSLPVLMLAGMGSSVASFIYDLFVSGYAAYSPGYLLIMLVIRLISGALLA
GLLGKAVSDSLAYTGVLNGMALGKELKKKRKRASEHASL

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG4721

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YKOE_BACSU (O34738)

Other databases:

- EMBL:   AJ002571
- EMBL:   AL009126
- PIR:   A69859
- RefSeq:   NP_389206.2
- EnsemblBacteria:   EBBACT00000002526
- GeneID:   939829
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU13230
- NMPDR:   fig|224308.1.peg.1325
- GenoList:   BSU13230
- GeneTree:   EBGT00050000001783
- HOGENOM:   HBG516202
- ProtClustDB:   CLSK887172
- BioCyc:   BSUB:BSU13230-MONOMER
- GO:   GO:0006810
- InterPro:   IPR017195
- PIRSF:   PIRSF037394

Pfam domain/function: PF09819 ABC_cobalt

EC number: NA

Molecular weight: Translated: 21224; Mature: 21224

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xcba69c4)-; HASH(0xdca1e98)-; HASH(0xb776924)-; HASH(0xd323854)-; HASH(0xce5badc)-; HASH(0xe654f74)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSWKVKEIVIMSVISIVFAVVYLLFTHFGNVLAGMFGPIAYEPIYGIWFIVSVIAAYMI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKPGAALVSEIIAALVECLLGNPSGPMVIVIGIVQGLGAEAVFLATRWKAYSLPVLMLAG
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
MGSSVASFIYDLFVSGYAAYSPGYLLIMLVIRLISGALLAGLLGKAVSDSLAYTGVLNGM
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGKELKKKRKRASEHASL
HHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MKSWKVKEIVIMSVISIVFAVVYLLFTHFGNVLAGMFGPIAYEPIYGIWFIVSVIAAYMI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKPGAALVSEIIAALVECLLGNPSGPMVIVIGIVQGLGAEAVFLATRWKAYSLPVLMLAG
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
MGSSVASFIYDLFVSGYAAYSPGYLLIMLVIRLISGALLAGLLGKAVSDSLAYTGVLNGM
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGKELKKKRKRASEHASL
HHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377