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The map label for this gene is xkdP

Identifier: 255767294

GI number: 255767294

Start: 1338957

End: 1339616

Strand: Direct

Name: xkdP

Synonym: BSU12690

Alternate gene names: 255767294

Gene position: 1338957-1339616 (Clockwise)

Preceding gene: 255767293

Following gene: 16078335

Centisome position: 31.76

GC content: 42.73

Gene sequence:

>660_bases
TTGACTAAATCCGTATATGAATTTTGGATTTCACAAGGGAAGGACAAGCTGCGGCTCCCCGTTCTTCCCGACCAGCTGAG
TATTTCAAATACAGTTCAGAATGAGACGGTTAAAGTAGCCAAGTTCGGTGACCTTACATTTATTGACGAGCAGGGAGCGA
AAGAAATTTCGTTCTCTTCTTTTTTTCCGAAGAAATACAGTCCGATAGCAGAATATCAAAACTTCCCGTCGCCGGAAAAT
GCGATAACAAAAATTGAAAAATGGATGAAGGCCAAAAAACCGGTTCAGTTTTTGATTACGGGAACTAAAGTGAATTTAAC
ATGCAGTATTGAAGGTTTTTCCTATAGCGAAGGCCAGCAGGATATAGGTGATCGTTCCTTTGATATTCAATTAAAAGAAT
ACAAAACCGCTTCCCCGCGGAAAATCAAGCAGAAGAAAAAAACAAAGGCAAAACGTCCGTCGAAGGCTGCGCCGAAGACG
TACACAGTGAAAAAGGGAGACACGCTATGGGACATTGCAGGCAGATTTTACGGGAACAGCACCCAATGGCGCAAAATTTG
GAATGCCAATAAAACAGCAATGATCAAACGAAGCAAACGGAACATCAGGCAGCCGGGCCACTGGATTTTTCCCGGCCAAA
AATTAAAGATACCGCAATGA

Upstream 100 bases:

>100_bases
AATGGACAAGACGCCGAAAGCCTAGCGGCGAAGATCAAGCAGGCGCTTATAGATGAACTGCAAAAGGATATCAATATTGG
AACGAAGGGAGTCGTTGCAT

Downstream 100 bases:

>100_bases
AACAGGTGATGTATGATGATAGAACTGTTCGTCATTAAAGACACAGAGTGGCTTGAGCTGGTTGCAGAAAGCGTATCGCT
TGAAGGCCATCGTTATCAGG

Product: PBSX prophage murein binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTKSVYEFWISQGKDKLRLPVLPDQLSISNTVQNETVKVAKFGDLTFIDEQGAKEISFSSFFPKKYSPIAEYQNFPSPEN
AITKIEKWMKAKKPVQFLITGTKVNLTCSIEGFSYSEGQQDIGDRSFDIQLKEYKTASPRKIKQKKKTKAKRPSKAAPKT
YTVKKGDTLWDIAGRFYGNSTQWRKIWNANKTAMIKRSKRNIRQPGHWIFPGQKLKIPQ

Sequences:

>Translated_219_residues
MTKSVYEFWISQGKDKLRLPVLPDQLSISNTVQNETVKVAKFGDLTFIDEQGAKEISFSSFFPKKYSPIAEYQNFPSPEN
AITKIEKWMKAKKPVQFLITGTKVNLTCSIEGFSYSEGQQDIGDRSFDIQLKEYKTASPRKIKQKKKTKAKRPSKAAPKT
YTVKKGDTLWDIAGRFYGNSTQWRKIWNANKTAMIKRSKRNIRQPGHWIFPGQKLKIPQ
>Mature_218_residues
TKSVYEFWISQGKDKLRLPVLPDQLSISNTVQNETVKVAKFGDLTFIDEQGAKEISFSSFFPKKYSPIAEYQNFPSPENA
ITKIEKWMKAKKPVQFLITGTKVNLTCSIEGFSYSEGQQDIGDRSFDIQLKEYKTASPRKIKQKKKTKAKRPSKAAPKTY
TVKKGDTLWDIAGRFYGNSTQWRKIWNANKTAMIKRSKRNIRQPGHWIFPGQKLKIPQ

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): XKDP_BACSU (P54335)

Other databases:

- EMBL:   Z70177
- EMBL:   AL009126
- PIR:   G69732
- RefSeq:   NP_389151.2
- ProteinModelPortal:   P54335
- SMR:   P54335
- EnsemblBacteria:   EBBACT00000002551
- GeneID:   939946
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12690
- NMPDR:   fig|224308.1.peg.1270
- GenoList:   BSU12690
- GeneTree:   EBGT00050000006390
- HOGENOM:   HBG428176
- ProtClustDB:   CLSK887132
- BioCyc:   BSUB:BSU12690-MONOMER
- InterPro:   IPR018392
- InterPro:   IPR002482
- SMART:   SM00257

Pfam domain/function: PF01476 LysM

EC number: NA

Molecular weight: Translated: 25219; Mature: 25088

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSVYEFWISQGKDKLRLPVLPDQLSISNTVQNETVKVAKFGDLTFIDEQGAKEISFSS
CCHHHHHHHHHCCCCEEECCCCCCCCCCCCHHCCCEEEEEECCCEEEECCCCCCCCCHHH
FFPKKYSPIAEYQNFPSPENAITKIEKWMKAKKPVQFLITGTKVNLTCSIEGFSYSEGQQ
CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCCCCCCCCH
DIGDRSFDIQLKEYKTASPRKIKQKKKTKAKRPSKAAPKTYTVKKGDTLWDIAGRFYGNS
HCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEHHHHHCCCC
TQWRKIWNANKTAMIKRSKRNIRQPGHWIFPGQKLKIPQ
CHHHHHHCCCCHHEEECHHHHCCCCCCEECCCCEEECCC
>Mature Secondary Structure 
TKSVYEFWISQGKDKLRLPVLPDQLSISNTVQNETVKVAKFGDLTFIDEQGAKEISFSS
CHHHHHHHHHCCCCEEECCCCCCCCCCCCHHCCCEEEEEECCCEEEECCCCCCCCCHHH
FFPKKYSPIAEYQNFPSPENAITKIEKWMKAKKPVQFLITGTKVNLTCSIEGFSYSEGQQ
CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCCCCCCCCH
DIGDRSFDIQLKEYKTASPRKIKQKKKTKAKRPSKAAPKTYTVKKGDTLWDIAGRFYGNS
HCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEHHHHHCCCC
TQWRKIWNANKTAMIKRSKRNIRQPGHWIFPGQKLKIPQ
CHHHHHHCCCCHHEEECHHHHCCCCCCEECCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377