Click here to switch to the map view.

The map label for this gene is xkdA

Identifier: 255767281

GI number: 255767281

Start: 1320570

End: 1321166

Strand: Reverse

Name: xkdA

Synonym: BSU12500

Alternate gene names: 255767281

Gene position: 1321166-1320570 (Counterclockwise)

Preceding gene: 16078316

Following gene: 16078312

Centisome position: 31.34

GC content: 45.06

Gene sequence:

>597_bases
TTGGGCGATTACTTATCACATCTGGAGGAATACGTTAAAAATTTATACGGCCGGCTGGGCATCACATCCCCTCATCACAT
TGACATGCTGAAAATCGCAAAGGATCTGGATATTTGGGTGCATTTTGAGGATATGGGGAGCATGATGGTGAAATACGACG
GCATGTACAGTATCGTATTGAACCAAAAAAAGTCACGGGAAGAGCAATGGGAGGATTTTGGCCATGAGCTGTGCCACGTG
TTAAAGCATGCAGGCAATCATTTTCAGATGAACAAGCTCTTCAGAGAGCTTCAGGAATTCCAGGCAAATCAATTTATGTA
CCACTTCTGTGTGCCAACCTTTATGCTGTTGCAGATGGAACTGCCGCAATGGAGAAGCCAGGCACTCGCCACAATTGCGG
CGGTATTCCGGGTAACAAAGGAATTTGCTGATAAAAGGCTTGACATGTTTGAACGGCGTAAAGCAGGTATTCAATTTCAG
AAGCGGCTCGCTTATTTATTATCTCACAAGCGGCCAAATGCGTACGAGGAAGGCGATCAGCAGCACTTGCAGGTCGCTGA
GGAAAAAGCGTTATATCATATTGGTAAAAACATCTGA

Upstream 100 bases:

>100_bases
TTTTAAAGAAAAGGGAAAGATTTCTACACTACCTTCCAGTCCTATACGGGCTTTTCTTTCTCGCTAAAAACAGAACAAAC
GTTCGAAAGGGAGTATTCAA

Downstream 100 bases:

>100_bases
TCAAATACGGGCTGAGGATATATTCCTCAGCCCAGAAGAGAACCTAACATTTCGACATTGGGGGAACTGTATTATGCAGC
CACATGGGCGCCGGTTTAAG

Product: PBSX phage protein, peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MGDYLSHLEEYVKNLYGRLGITSPHHIDMLKIAKDLDIWVHFEDMGSMMVKYDGMYSIVLNQKKSREEQWEDFGHELCHV
LKHAGNHFQMNKLFRELQEFQANQFMYHFCVPTFMLLQMELPQWRSQALATIAAVFRVTKEFADKRLDMFERRKAGIQFQ
KRLAYLLSHKRPNAYEEGDQQHLQVAEEKALYHIGKNI

Sequences:

>Translated_198_residues
MGDYLSHLEEYVKNLYGRLGITSPHHIDMLKIAKDLDIWVHFEDMGSMMVKYDGMYSIVLNQKKSREEQWEDFGHELCHV
LKHAGNHFQMNKLFRELQEFQANQFMYHFCVPTFMLLQMELPQWRSQALATIAAVFRVTKEFADKRLDMFERRKAGIQFQ
KRLAYLLSHKRPNAYEEGDQQHLQVAEEKALYHIGKNI
>Mature_197_residues
GDYLSHLEEYVKNLYGRLGITSPHHIDMLKIAKDLDIWVHFEDMGSMMVKYDGMYSIVLNQKKSREEQWEDFGHELCHVL
KHAGNHFQMNKLFRELQEFQANQFMYHFCVPTFMLLQMELPQWRSQALATIAAVFRVTKEFADKRLDMFERRKAGIQFQK
RLAYLLSHKRPNAYEEGDQQHLQVAEEKALYHIGKNI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaB

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XKDA_BACSU (P39780)

Other databases:

- EMBL:   AF034138
- EMBL:   AL009126
- EMBL:   Z70177
- EMBL:   Z34287
- EMBL:   M36478
- PIR:   A69731
- PIR:   PQ0134
- RefSeq:   NP_389132.3
- ProteinModelPortal:   P39780
- EnsemblBacteria:   EBBACT00000001787
- GeneID:   939838
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12500
- GenoList:   BSU12500
- GeneTree:   EBGT00050000001873
- HOGENOM:   HBG337927
- ProtClustDB:   CLSK887620
- BioCyc:   BSUB:BSU12500-MONOMER
- InterPro:   IPR010359

Pfam domain/function: PF06114 DUF955

EC number: NA

Molecular weight: Translated: 23585; Mature: 23453

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDYLSHLEEYVKNLYGRLGITSPHHIDMLKIAKDLDIWVHFEDMGSMMVKYDGMYSIVL
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEEHHHHHHHHHHHCCHHHHHH
NQKKSREEQWEDFGHELCHVLKHAGNHFQMNKLFRELQEFQANQFMYHFCVPTFMLLQME
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPQWRSQALATIAAVFRVTKEFADKRLDMFERRKAGIQFQKRLAYLLSHKRPNAYEEGDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
QHLQVAEEKALYHIGKNI
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GDYLSHLEEYVKNLYGRLGITSPHHIDMLKIAKDLDIWVHFEDMGSMMVKYDGMYSIVL
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEEHHHHHHHHHHHCCHHHHHH
NQKKSREEQWEDFGHELCHVLKHAGNHFQMNKLFRELQEFQANQFMYHFCVPTFMLLQME
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPQWRSQALATIAAVFRVTKEFADKRLDMFERRKAGIQFQKRLAYLLSHKRPNAYEEGDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
QHLQVAEEKALYHIGKNI
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 8083174; 2125016