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The map label for this gene is yjcD

Identifier: 255767266

GI number: 255767266

Start: 1253713

End: 1255866

Strand: Reverse

Name: yjcD

Synonym: BSU11820

Alternate gene names: 255767266

Gene position: 1255866-1253713 (Counterclockwise)

Preceding gene: 16078249

Following gene: 16078243

Centisome position: 29.79

GC content: 47.03

Gene sequence:

>2154_bases
TTGTTACGGCTTAACATCGCCGATCCGCCAGAGTTTATCCATCGCCAGCCAGGCGATTTTCCGGCATGTGAGGAGGCGTG
CGAACCGAAGCCCTCTAAAGAGGGGAAAAAAGAAGATGATCAGGAATCTGGTGTCATTCGTTTACCCAAGGGAAAAGCGA
TCGCCGCTGACCCGTCCCCAGCTGTTACAGAATGGCACCGTCCTAGAAGCATTAAACCAGGAACACCATTTGTGCCAAAA
ACAATAGAACCCGATACGAGCCTTTTTCCGTCTGTCGGTTTAAACACGGATCAGCTGAAAGCTGTCACGGAAACAGAGGG
CCCGCTCCTCGTGCTTGCAGGTGCGGGGAGCGGAAAAACACGGGTACTGACAGCCCGTGCCGCCCACATGATCGAACACT
TAGGCATACCGCCTGAAAATATGCTGCTTGTCACCTTTACAACAAAAGCTGTCGCTGAAATGAAAGAGCGTATGGCGAAC
CAGTACGGATTACAGCCGGCAAAAGTCAGAAGAATTGTGACAGGAACATTCCACAGTCTGTTTTATAAGATCTTGTATCA
CTCTAATTCTGCTAAATGGAACGGTGAGCATCTGCTGAAAATGGAGTGGCAGCGGGAACAATATATCAAAAAAGCACTCT
ATGAAGAAGGCATCGATGAGAAAGAATCCCCAGTTGACCAAGCCCTGCAGCAGATCGGTTTTTGGAAAAACACTTATGTC
CCAAATGAACGCATCCCTCTAAAAGATGAGTGGGAAAAACAAGTTTATCGTTTATATGAACATTATGAACGCCAGAAAAA
AGAACACAGCCAATTTGATTTTGATGACATGGCTTCAGCCTGCTATGAATTGTTTATCGAGCGGCCTGACCTTCTGGAAC
AATATCAATCTCGGTTTACGTATATCTTAATTGATGAGTTTCAGGACATTAATCCGGTTCAATACAAAATCATGCAAATG
CTCGCCAGCCCGGAGCAAAACCTGTGCTGTGTCGGAGACGATGACCAGTCCATCTACGCGTTTCGCGGAAGCAATCCGTC
TTTCATTCTTGATTTTCAAAAGGATTATCCGGGAGCGAAGACGATCTATTTAACTGCGAACTACAGGTCTACGCACCCGA
TCGTCTCTAGTGCTGATATCGTTGTGAAAAAGAACAAAAACAGATATGCCAAAACGCTTGAAGCGGCCCGCGATGACATT
CAGGTCCCTGTGCTGTTTTATCCTTATGATGAAGAGGAAGAAGCCACAATGGTCGTTTCCGATATCAAAGAAAAAATTCA
AAATGGAGCCAGTCCAGAAGACTTTGCGGTTCTTTACCGCACAAACAGCGGAGGCCGTGCTATATATGAAAGGCTTCATC
AATCGTCAATTCCGTATACAGCTGACCGCGGCGTCCAATCGTTTTACAGCAGACGGATCGTCCGCCAGATTCTCGCCTAC
TTGTACGCCAGCCAAAATGAGGATGACACCGAGGCGATTAAACACTTGCTTCCCGCCTTGTTTTTAAAACAGTCCGCTTT
GAATACGCTGAAGGCGCTCTCGATTACAGAGGACTGTACCATGATCAAAGCGCTGGCCAAATTGCCTGATCTGAAGCCAT
TCCAGCTGGACAAAATCAAGAAAATCGTACCGTTTTTTGCAAGCCTCCGCACAATGAAACCCGTAGAAGCCATCACCTTT
GCAGAAGGAAAAATGGGCTTCTCCGAGTATTTAAAAAAGCGGGGCAATGAGGGCAACAAGCTGGAAAAAGGCTCTGATGA
CCTGCGCGACATCAAGGTTGTCGCCAAGAAGTTCAAAACGATTCCTGACTTTCTTGCCCACGTAGACCATATGAGGGCCG
CTGAGAAAAACAGAACGGATGAACATGGCGTTCAGCTGATGACCATTCACCGGTCAAAAGGCCTTGAATTCAAAACAGTC
TACGTGTTAGGCACTGTAGATGGCTCGATTCCGCACGATTTCTCATTAGAAACGGCAAGAAAAGGAGACGAGGCCGCTCT
TGAGGAGGAAAGACGCCTTTTATATGTAGCCATGACCCGGGCGAAACAGCATTTATATTTGTCTTGCCCTGCTAACAGGC
GCGGCAAAACAGCCAACCGCTCAAGATTTTTGTATCCCCTGCTACAGAAAGCAAGACAGCCCTTGCATCATTAA

Upstream 100 bases:

>100_bases
AATCATACATTTACATACATATTCGAGAGAACATTATCAATTCCTCTTTGAAGAGGGAATAAAAGGACATTTATTTTGTT
CTCATTGCGGAAAGCCCGTT

Downstream 100 bases:

>100_bases
CAGCCCGGCAGATTACTGCCGGGTTTTTACTGTAAAAAAAGGCCCGCTGCAGTGAGTCAGCCAGGCCATCCACTTATTTA
TTATCCATCATTTTAGAAAT

Product: ATP-dependent DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 717; Mature: 717

Protein sequence:

>717_residues
MLRLNIADPPEFIHRQPGDFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSPAVTEWHRPRSIKPGTPFVPK
TIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPPENMLLVTFTTKAVAEMKERMAN
QYGLQPAKVRRIVTGTFHSLFYKILYHSNSAKWNGEHLLKMEWQREQYIKKALYEEGIDEKESPVDQALQQIGFWKNTYV
PNERIPLKDEWEKQVYRLYEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFTYILIDEFQDINPVQYKIMQM
LASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYPGAKTIYLTANYRSTHPIVSSADIVVKKNKNRYAKTLEAARDDI
QVPVLFYPYDEEEEATMVVSDIKEKIQNGASPEDFAVLYRTNSGGRAIYERLHQSSIPYTADRGVQSFYSRRIVRQILAY
LYASQNEDDTEAIKHLLPALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIKKIVPFFASLRTMKPVEAITF
AEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKFKTIPDFLAHVDHMRAAEKNRTDEHGVQLMTIHRSKGLEFKTV
YVLGTVDGSIPHDFSLETARKGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKTANRSRFLYPLLQKARQPLHH

Sequences:

>Translated_717_residues
MLRLNIADPPEFIHRQPGDFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSPAVTEWHRPRSIKPGTPFVPK
TIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPPENMLLVTFTTKAVAEMKERMAN
QYGLQPAKVRRIVTGTFHSLFYKILYHSNSAKWNGEHLLKMEWQREQYIKKALYEEGIDEKESPVDQALQQIGFWKNTYV
PNERIPLKDEWEKQVYRLYEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFTYILIDEFQDINPVQYKIMQM
LASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYPGAKTIYLTANYRSTHPIVSSADIVVKKNKNRYAKTLEAARDDI
QVPVLFYPYDEEEEATMVVSDIKEKIQNGASPEDFAVLYRTNSGGRAIYERLHQSSIPYTADRGVQSFYSRRIVRQILAY
LYASQNEDDTEAIKHLLPALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIKKIVPFFASLRTMKPVEAITF
AEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKFKTIPDFLAHVDHMRAAEKNRTDEHGVQLMTIHRSKGLEFKTV
YVLGTVDGSIPHDFSLETARKGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKTANRSRFLYPLLQKARQPLHH
>Mature_717_residues
MLRLNIADPPEFIHRQPGDFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSPAVTEWHRPRSIKPGTPFVPK
TIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPPENMLLVTFTTKAVAEMKERMAN
QYGLQPAKVRRIVTGTFHSLFYKILYHSNSAKWNGEHLLKMEWQREQYIKKALYEEGIDEKESPVDQALQQIGFWKNTYV
PNERIPLKDEWEKQVYRLYEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFTYILIDEFQDINPVQYKIMQM
LASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYPGAKTIYLTANYRSTHPIVSSADIVVKKNKNRYAKTLEAARDDI
QVPVLFYPYDEEEEATMVVSDIKEKIQNGASPEDFAVLYRTNSGGRAIYERLHQSSIPYTADRGVQSFYSRRIVRQILAY
LYASQNEDDTEAIKHLLPALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIKKIVPFFASLRTMKPVEAITF
AEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKFKTIPDFLAHVDHMRAAEKNRTDEHGVQLMTIHRSKGLEFKTV
YVLGTVDGSIPHDFSLETARKGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKTANRSRFLYPLLQKARQPLHH

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI2367296, Length=632, Percent_Identity=32.120253164557, Blast_Score=287, Evalue=1e-78,
Organism=Escherichia coli, GI48994965, Length=653, Percent_Identity=30.6278713629403, Blast_Score=248, Evalue=1e-66,
Organism=Escherichia coli, GI1787196, Length=342, Percent_Identity=26.0233918128655, Blast_Score=97, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6322369, Length=500, Percent_Identity=30, Blast_Score=146, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6324477, Length=674, Percent_Identity=22.8486646884273, Blast_Score=97, Evalue=1e-20,

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 81998; Mature: 81998

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLNIADPPEFIHRQPGDFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSP
CEEECCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCC
AVTEWHRPRSIKPGTPFVPKTIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKT
CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEECCCCCEEEEEECCCCCE
RVLTARAAHMIEHLGIPPENMLLVTFTTKAVAEMKERMANQYGLQPAKVRRIVTGTFHSL
EEEHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FYKILYHSNSAKWNGEHLLKMEWQREQYIKKALYEEGIDEKESPVDQALQQIGFWKNTYV
HHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCC
PNERIPLKDEWEKQVYRLYEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCE
YILIDEFQDINPVQYKIMQMLASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYPGAK
EEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCCE
TIYLTANYRSTHPIVSSADIVVKKNKNRYAKTLEAARDDIQVPVLFYPYDEEEEATMVVS
EEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHH
DIKEKIQNGASPEDFAVLYRTNSGGRAIYERLHQSSIPYTADRGVQSFYSRRIVRQILAY
HHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LYASQNEDDTEAIKHLLPALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHH
KIVPFFASLRTMKPVEAITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKFKT
HHHHHHHHHHHCCCHHHEEECCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
IPDFLAHVDHMRAAEKNRTDEHGVQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSLETAR
HHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHC
KGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKTANRSRFLYPLLQKARQPLHH
CCCHHHHHHHHHEEEEEEHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLRLNIADPPEFIHRQPGDFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSP
CEEECCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCC
AVTEWHRPRSIKPGTPFVPKTIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKT
CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEECCCCCEEEEEECCCCCE
RVLTARAAHMIEHLGIPPENMLLVTFTTKAVAEMKERMANQYGLQPAKVRRIVTGTFHSL
EEEHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FYKILYHSNSAKWNGEHLLKMEWQREQYIKKALYEEGIDEKESPVDQALQQIGFWKNTYV
HHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCC
PNERIPLKDEWEKQVYRLYEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCE
YILIDEFQDINPVQYKIMQMLASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYPGAK
EEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCCE
TIYLTANYRSTHPIVSSADIVVKKNKNRYAKTLEAARDDIQVPVLFYPYDEEEEATMVVS
EEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHH
DIKEKIQNGASPEDFAVLYRTNSGGRAIYERLHQSSIPYTADRGVQSFYSRRIVRQILAY
HHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LYASQNEDDTEAIKHLLPALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHH
KIVPFFASLRTMKPVEAITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKFKT
HHHHHHHHHHHCCCHHHEEECCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
IPDFLAHVDHMRAAEKNRTDEHGVQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSLETAR
HHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHC
KGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKTANRSRFLYPLLQKARQPLHH
CCCHHHHHHHHHEEEEEEHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]