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The map label for this gene is pepF

Identifier: 255767260

GI number: 255767260

Start: 1231083

End: 1233095

Strand: Direct

Name: pepF

Synonym: BSU11540

Alternate gene names: 255767260

Gene position: 1231083-1233095 (Clockwise)

Preceding gene: 16078218

Following gene: 16078224

Centisome position: 29.2

GC content: 43.42

Gene sequence:

>2013_bases
GTGAAAGGCACAAAAGGAAAGGTTTTTCGTGTTTTTACTGCTTTTTTGGCATTCGTTCTCTTCATTACTGCATATGATTT
GACAAAAGGCAGTGAAAAACCGGAAGATATTCACAACACAAGTTTATTGAGAAACAGCTGTTTTTTCAATTGGCTTGAAT
CAAAGAAGACGAGGGGGATCACCATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAA
GACACATGGAGACTTGAGGATATTTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCC
GAATTTATCTAAGTATAAAGGAAAGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGA
TGGAGCGGCTAGGTAGGCTGTACACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTG
AATGACAAGGCGGGAAACCTGTATACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGA
AGACAAACTGCAGCAGTTCATTCTTGAAAAAGAAGAATTGAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAAC
GTCCGCATGTGCTGAGCGAGAAGGAAGAGGCGCTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTC
AGCGTGTTAAATAACGCAGATATAACGTTTCCATCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAA
CTTTATTAATTTCTTGGAAAGTGAAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAAT
ATAAAAACACAATGGCCACGACGCTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCC
GCGCGTGAGGCTGCGCTTTCTAACAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTT
GCCGCTCCTGCACCGCTATATTGCGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACAC
CGCTTGTGAAAGATGCTGGGATGAAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCACCTTTAGGG
GAAGAATATGCCTCTATCCTAAAAGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGG
GGCTTATTCATCAGGAGCTTACGGCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGC
TCGTGCACGAGTTTGGACATTCCGTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGCATC
TTTGTCGCGGAAGTTGCCTCTACGACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACA
GCGCTTATATATTCTCAACCATATGCTTGAGGGCTTCAGGGGAACGGTCTTCAGACAAACGATGTTCGCTGAATTTGAAC
ATCTGATTCATACAAAGGCGCAAGAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAA
AAGTATTTTGGAGACGGCATGGTGATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTA
CTATGTGTATCAGTATGCGACAGGTTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGG
TTGACCGTTATATTGACTTCCTGAAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATG
ACGTCTCCAGAGCCAATCGAAGCCGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGT
CAAGCAGTCTTAA

Upstream 100 bases:

>100_bases
ATACACTCCATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAATGAGTTTGTCTTATTTGGCTCACCCTAAG
ACAAAGGTGGTGGGCAGGCT

Downstream 100 bases:

>100_bases
AAAAGTAAGCCTGTGCGGAAATGACGCACAGGCTTTTTTAAAACCCTTTAAAGGTTTTCCGGTGATTCAAGCGGTAGAGG
GTAAACAAAATAGACAGAAA

Product: oligoendopeptidase F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MKGTKGKVFRVFTAFLAFVLFITAYDLTKGSEKPEDIHNTSLLRNSCFFNWLESKKTRGITMAEEKKANQLPDRSEVKAE
DTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLYTYAHMRSDQDTGNSFYQGL
NDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEKEEALLAEASEVLGSSSNTF
SVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATTLSGTVKKDNFYARVKKYKS
AREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGMKVTYEEAKDYMLKGLAPLG
EEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHSVHSYYTRKHQPYPYGNYSI
FVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQEGEPLTPELLTNVYYDLNK
KYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFLKAGSSQYPIDVLKKAGVDM
TSPEPIEAACKMFEEKLDEMEELLMKVKQS

Sequences:

>Translated_670_residues
MKGTKGKVFRVFTAFLAFVLFITAYDLTKGSEKPEDIHNTSLLRNSCFFNWLESKKTRGITMAEEKKANQLPDRSEVKAE
DTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLYTYAHMRSDQDTGNSFYQGL
NDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEKEEALLAEASEVLGSSSNTF
SVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATTLSGTVKKDNFYARVKKYKS
AREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGMKVTYEEAKDYMLKGLAPLG
EEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHSVHSYYTRKHQPYPYGNYSI
FVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQEGEPLTPELLTNVYYDLNK
KYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFLKAGSSQYPIDVLKKAGVDM
TSPEPIEAACKMFEEKLDEMEELLMKVKQS
>Mature_670_residues
MKGTKGKVFRVFTAFLAFVLFITAYDLTKGSEKPEDIHNTSLLRNSCFFNWLESKKTRGITMAEEKKANQLPDRSEVKAE
DTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLYTYAHMRSDQDTGNSFYQGL
NDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEKEEALLAEASEVLGSSSNTF
SVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATTLSGTVKKDNFYARVKKYKS
AREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGMKVTYEEAKDYMLKGLAPLG
EEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHSVHSYYTRKHQPYPYGNYSI
FVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQEGEPLTPELLTNVYYDLNK
KYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFLKAGSSQYPIDVLKKAGVDM
TSPEPIEAACKMFEEKLDEMEELLMKVKQS

Specific function: Unknown

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PEPF_BACSU (O31605)

Other databases:

- EMBL:   AL009126
- PIR:   G69843
- RefSeq:   NP_389036.2
- ProteinModelPortal:   O31605
- SMR:   O31605
- MEROPS:   M03.007
- EnsemblBacteria:   EBBACT00000002416
- GeneID:   936404
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU11540
- NMPDR:   fig|224308.1.peg.1155
- GenoList:   BSU11540
- GeneTree:   EBGT00070000031930
- HOGENOM:   HBG305137
- ProtClustDB:   CLSK2301453
- BioCyc:   BSUB:BSU11540-MONOMER
- GO:   GO:0006508
- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647
- TIGRFAMs:   TIGR00181

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N

EC number: NA

Molecular weight: Translated: 77074; Mature: 77074

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: ACT_SITE 457-457

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGTKGKVFRVFTAFLAFVLFITAYDLTKGSEKPEDIHNTSLLRNSCFFNWLESKKTRGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
TMAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSA
CCHHHHHHHCCCCCCCCCCCCCEEHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCHHCCHH
DHLYEALTYQDKVMERLGRLYTYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHCCHHHHHH
EILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEKEEALLAEASEVLGSSSNTF
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHHCCCCCCE
SVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMAT
EEECCCCEECCCCCCCCCCCCEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
TLSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKV
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LELDEVHIYDLYTPLVKDAGMKVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYE
HHHHCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHH
NKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHSVHSYYTRKHQPYPYGNYSI
CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
FVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKA
EEEEHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QEGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQ
CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEHHHCCCHHHCCHHHHHEEEEEECCCHHHHH
ALSSQILKEGKPAVDRYIDFLKAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEM
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
EELLMKVKQS
HHHHHHHHCC
>Mature Secondary Structure
MKGTKGKVFRVFTAFLAFVLFITAYDLTKGSEKPEDIHNTSLLRNSCFFNWLESKKTRGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
TMAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSA
CCHHHHHHHCCCCCCCCCCCCCEEHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCHHCCHH
DHLYEALTYQDKVMERLGRLYTYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHCCHHHHHH
EILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEKEEALLAEASEVLGSSSNTF
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHHCCCCCCE
SVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMAT
EEECCCCEECCCCCCCCCCCCEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
TLSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKV
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LELDEVHIYDLYTPLVKDAGMKVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYE
HHHHCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHH
NKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHSVHSYYTRKHQPYPYGNYSI
CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
FVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKA
EEEEHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QEGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQ
CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEHHHCCCHHHCCHHHHHEEEEEECCCHHHHH
ALSSQILKEGKPAVDRYIDFLKAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEM
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
EELLMKVKQS
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377