Click here to switch to the map view.

The map label for this gene is yybS

Identifier: 16081104

GI number: 16081104

Start: 4165659

End: 4166588

Strand: Reverse

Name: yybS

Synonym: BSU40520

Alternate gene names: 16081104

Gene position: 4166588-4165659 (Counterclockwise)

Preceding gene: 255767874

Following gene: 16081103

Centisome position: 98.84

GC content: 40.54

Gene sequence:

>930_bases
GTGAAACAAACGAGAGCTTTAATGGAAGGTGCTATTTTAATCAGTCTGTTTGCGATCATTACGCTTCTGGTCGTTTATGT
TCCTGTGATTGGAACAATTCTGTTATTTGCACTGCCGCTGCCAATGATCTTGTATACGATCAGACATGGATTGAAGCTAG
GGATATGGATGGGCGCTGTCAGTCTTCCGGTTGTTTTTATTGTCGGGTCCTTTAACGGGCTTATTGTAGCTTTTATGTCA
GCTTGCGCCGGCATTGCCATGGGACATTTTTTCAAAAGGAAAGAGCCCGGGCACGCCATTATTTCGGGCGCTCTTATTTA
TATGCTTAGTATTGTCTTCTATTTTGTGATAAGCATTCAGTTTTTGGGTATCAATATCATTGATGAGGCAATGACACAAT
ACCGGCAATCTCTTGATATTGTAGAAACTGTAGCGAAGCAGTCGGGCAATGCTGGGCAGTTTGAGAAGCAATTAAAACTG
ATGGAAGAACAATTGGGTATCGTTCAATATCTTTTTCCAACAGCTATTGTGATGGTAGGAGTTATTTTTTCTTTCCTCAG
TTACCTTATCGCTAAGCCGCTCTTAAGGCGATTCTCCCCCGATATTCCTAATCTAAAGCCTTTTAGAGAGTTGAAGTTTC
CGCAAAGTGTTGTAGTACTGTATTTGATTATTGTCATGCTTTCATTTTTGCCTTTAGAAAAAGGCCAAATGCTGTACTCT
ATCGCTTTAAATGGGGAGTTTATACTCGGGTTTCTGATTTTCATCCAAGGTTTATCATTTATCTTTTTCTATTGCCATAA
GAAACAATATCCAAAGGCTGCGGCTGTGATTGCTGTCATACTTGGGTTTGTGCATCCGGTCTTCATGGCGGCCATTCGCA
TTTTAGGCGTTTTAGATATGGGCTTTCATATAAGGAATAAGGTGAAGTGA

Upstream 100 bases:

>100_bases
AAAACATTCGGTGCAAAGCATGTTGCAGCGATGAACAAAAGAGCAGTCGTTTATGCTGCTCTTTTCTATTCGTATGTTCA
GGATGATACGAGGTGACTAA

Downstream 100 bases:

>100_bases
ACATGAGTTTTACTCACATGGTGGGGAGTGATAGAAATGCCAAGCTTTTATGAAAAACCGCTGTTTCGGTATCCCATCTA
TGCATTGATTGCTCTGTCAA

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKQTRALMEGAILISLFAIITLLVVYVPVIGTILLFALPLPMILYTIRHGLKLGIWMGAVSLPVVFIVGSFNGLIVAFMS
ACAGIAMGHFFKRKEPGHAIISGALIYMLSIVFYFVISIQFLGINIIDEAMTQYRQSLDIVETVAKQSGNAGQFEKQLKL
MEEQLGIVQYLFPTAIVMVGVIFSFLSYLIAKPLLRRFSPDIPNLKPFRELKFPQSVVVLYLIIVMLSFLPLEKGQMLYS
IALNGEFILGFLIFIQGLSFIFFYCHKKQYPKAAAVIAVILGFVHPVFMAAIRILGVLDMGFHIRNKVK

Sequences:

>Translated_309_residues
MKQTRALMEGAILISLFAIITLLVVYVPVIGTILLFALPLPMILYTIRHGLKLGIWMGAVSLPVVFIVGSFNGLIVAFMS
ACAGIAMGHFFKRKEPGHAIISGALIYMLSIVFYFVISIQFLGINIIDEAMTQYRQSLDIVETVAKQSGNAGQFEKQLKL
MEEQLGIVQYLFPTAIVMVGVIFSFLSYLIAKPLLRRFSPDIPNLKPFRELKFPQSVVVLYLIIVMLSFLPLEKGQMLYS
IALNGEFILGFLIFIQGLSFIFFYCHKKQYPKAAAVIAVILGFVHPVFMAAIRILGVLDMGFHIRNKVK
>Mature_309_residues
MKQTRALMEGAILISLFAIITLLVVYVPVIGTILLFALPLPMILYTIRHGLKLGIWMGAVSLPVVFIVGSFNGLIVAFMS
ACAGIAMGHFFKRKEPGHAIISGALIYMLSIVFYFVISIQFLGINIIDEAMTQYRQSLDIVETVAKQSGNAGQFEKQLKL
MEEQLGIVQYLFPTAIVMVGVIFSFLSYLIAKPLLRRFSPDIPNLKPFRELKFPQSVVVLYLIIVMLSFLPLEKGQMLYS
IALNGEFILGFLIFIQGLSFIFFYCHKKQYPKAAAVIAVILGFVHPVFMAAIRILGVLDMGFHIRNKVK

Specific function: Unknown

COG id: COG4241

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYBS_BACSU (P37485)

Other databases:

- EMBL:   D26185
- EMBL:   AL009126
- PIR:   S65977
- RefSeq:   NP_391932.1
- ProteinModelPortal:   P37485
- EnsemblBacteria:   EBBACT00000000727
- GeneID:   937844
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40520
- NMPDR:   fig|224308.1.peg.4058
- GenoList:   BSU40520
- GeneTree:   EBGT00050000002458
- HOGENOM:   HBG340101
- OMA:   CFSWITV
- ProtClustDB:   CLSK2752580
- BioCyc:   BSUB:BSU40520-MONOMER
- InterPro:   IPR018710

Pfam domain/function: PF09991 DUF2232

EC number: NA

Molecular weight: Translated: 34535; Mature: 34535

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCC
>Mature Secondary Structure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HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377