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The map label for this gene is yybT

Identifier: 16081103

GI number: 16081103

Start: 4163643

End: 4165622

Strand: Reverse

Name: yybT

Synonym: BSU40510

Alternate gene names: 16081103

Gene position: 4165622-4163643 (Counterclockwise)

Preceding gene: 16081104

Following gene: 16081102

Centisome position: 98.81

GC content: 44.8

Gene sequence:

>1980_bases
ATGCCAAGCTTTTATGAAAAACCGCTGTTTCGGTATCCCATCTATGCATTGATTGCTCTGTCAATTATTACAATCCTCAT
CAGCTTTTATTTTAACTGGATATTAGGAACCGTCGAAGTGCTGCTGCTGGCAGTTATTTTGTTTTTTATTAAGCGTGCTG
ATTCTCTTATTCGACAAGAGATTGATGCTTATATTTCTACGTTGTCCTACAGGTTGAAAAAAGTCGGTGAAGAGGCATTG
ATGGAAATGCCGATTGGAATCATGCTTTTTAATGACCAATATTATATAGAATGGGCAAATCCGTTTCTTTCCTCTTGTTT
TAATGAAAGCACTTTAGTGGGGAGATCACTTTACGATACTTGTGAATCGGTAGTGCCGCTTATCAAACAAGAGGTGGAAT
CGGAAACGGTTACATTGAATGACCGCAAGTTTAGGGTTGTCATCAAACGGGATGAGCGTCTCTTATATTTCTTTGATGTA
ACAGAACAAATCCAGATTGAAAAGCTATATGAAAACGAAAGAACCGTCCTGGCATATATTTTCCTTGATAACTATGATGA
TGTGACACAAGGATTGGATGACCAGACGAGAAGCACGATGAACAGCCAGGTGACATCTTTGCTGAACGCTTGGGCGCAGG
AGTACGGGATCTTCTTGAAAAGGACGTCTTCAGAACGCTTTATTGCTGTACTTAATGAACATATCTTAACTGAACTCGAA
AATTCGAAGTTTTCGATTCTTGATGAAGTGCGGGAAAAAACCTCGTTTGACGGTGTAGCGCTGACGTTAAGCGTCGGTGT
CGGGGCTTCAGTCTCTTCCCTGAAAGAACTTGGCGATTTGGCGCAATCCAGCTTGGACTTAGCACTGGGACGCGGCGGAG
ACCAGGTAGCCATTAAGCTGCCAAACGGCAAGGTGAAGTTTTACGGCGGTAAAACAAACCCAATGGAGAAACGAACAAGG
GTGCGGGCCCGCGTGATTTCTCACGCCTTAAAGGAAATCGTCACCGAAAGCAGCAATGTGATTATCATGGGGCATAAATT
CCCCGACATGGATTCTATCGGCGCAGCGATCGGGATTTTAAAGGTGGCTCAGGCAAATAACAAAGATGGTTTTATCGTGA
TTGACCCAAACCAAATCGGATCAAGTGTGCAGCGTTTGATTGGGGAAATCAAAAAATATGAAGAACTGTGGTCAAGATTT
ATTACGCCTGAAGAAGCAATGGAGATTTCCAATGATGACACACTGCTTGTGATCGTTGATACACATAAGCCGTCACTCGT
CATGGAGGAACGGCTGGTCAATAAAATTGAACATATCGTGGTCATCGACCATCACCGAAGAGGTGAGGAGTTTATCAGAG
ATCCGCTGCTCGTTTATATGGAACCATACGCTTCTTCCACAGCGGAATTGGTGACAGAGCTGCTTGAATATCAGCCGAAG
CGCTTAAAAATCAATATGATTGAAGCAACAGCCCTATTAGCTGGTATAATAGTGGATACAAAGAGCTTTTCTCTCCGCAC
GGGCTCGCGGACTTTCGATGCGGCTTCTTATTTAAGGGCAAAAGGCGCCGACACGGTGCTGGTGCAGAAGTTTCTGAAAG
AAACCGTTGATTCCTATATTAAACGGGCGAAGCTGATCCAGCATACGGTCCTCTATAAAGATAACATTGCGATTGCTTCT
CTTCCTGAAAATGAAGAGGAATACTTCGATCAAGTGCTGATTGCGCAGGCTGCCGATTCGCTGCTATCGATGAGTGAGGT
TGAGGCTTCATTTGCGGTGGCGAGACGGGATGAACAAACGGTTTGTATCAGTGCTCGGTCGCTTGGCGAGGTAAATGTTC
AGATCATCATGGAGGCCCTGGAAGGCGGAGGGCATTTAACAAATGCGGCGACTCAGTTGTCCGGCATTTCAGTTTCTGAA
GCGCTGGAACGGCTGAAGCACGCCATAGATGAGTATTTTGAGGGAGGCGTACAGAGATGA

Upstream 100 bases:

>100_bases
GGCGGCCATTCGCATTTTAGGCGTTTTAGATATGGGCTTTCATATAAGGAATAAGGTGAAGTGAACATGAGTTTTACTCA
CATGGTGGGGAGTGATAGAA

Downstream 100 bases:

>100_bases
AGGTTATTTTCTTACAAGATGTAAAAGGAAAAGGAAAAAAAGGCGAAGTCAAAAACGTAGCAGACGGTTATGCGCATAAC
TTTCTAATTAAAAAAGGCCT

Product: phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 659; Mature: 658

Protein sequence:

>659_residues
MPSFYEKPLFRYPIYALIALSIITILISFYFNWILGTVEVLLLAVILFFIKRADSLIRQEIDAYISTLSYRLKKVGEEAL
MEMPIGIMLFNDQYYIEWANPFLSSCFNESTLVGRSLYDTCESVVPLIKQEVESETVTLNDRKFRVVIKRDERLLYFFDV
TEQIQIEKLYENERTVLAYIFLDNYDDVTQGLDDQTRSTMNSQVTSLLNAWAQEYGIFLKRTSSERFIAVLNEHILTELE
NSKFSILDEVREKTSFDGVALTLSVGVGASVSSLKELGDLAQSSLDLALGRGGDQVAIKLPNGKVKFYGGKTNPMEKRTR
VRARVISHALKEIVTESSNVIIMGHKFPDMDSIGAAIGILKVAQANNKDGFIVIDPNQIGSSVQRLIGEIKKYEELWSRF
ITPEEAMEISNDDTLLVIVDTHKPSLVMEERLVNKIEHIVVIDHHRRGEEFIRDPLLVYMEPYASSTAELVTELLEYQPK
RLKINMIEATALLAGIIVDTKSFSLRTGSRTFDAASYLRAKGADTVLVQKFLKETVDSYIKRAKLIQHTVLYKDNIAIAS
LPENEEEYFDQVLIAQAADSLLSMSEVEASFAVARRDEQTVCISARSLGEVNVQIIMEALEGGGHLTNAATQLSGISVSE
ALERLKHAIDEYFEGGVQR

Sequences:

>Translated_659_residues
MPSFYEKPLFRYPIYALIALSIITILISFYFNWILGTVEVLLLAVILFFIKRADSLIRQEIDAYISTLSYRLKKVGEEAL
MEMPIGIMLFNDQYYIEWANPFLSSCFNESTLVGRSLYDTCESVVPLIKQEVESETVTLNDRKFRVVIKRDERLLYFFDV
TEQIQIEKLYENERTVLAYIFLDNYDDVTQGLDDQTRSTMNSQVTSLLNAWAQEYGIFLKRTSSERFIAVLNEHILTELE
NSKFSILDEVREKTSFDGVALTLSVGVGASVSSLKELGDLAQSSLDLALGRGGDQVAIKLPNGKVKFYGGKTNPMEKRTR
VRARVISHALKEIVTESSNVIIMGHKFPDMDSIGAAIGILKVAQANNKDGFIVIDPNQIGSSVQRLIGEIKKYEELWSRF
ITPEEAMEISNDDTLLVIVDTHKPSLVMEERLVNKIEHIVVIDHHRRGEEFIRDPLLVYMEPYASSTAELVTELLEYQPK
RLKINMIEATALLAGIIVDTKSFSLRTGSRTFDAASYLRAKGADTVLVQKFLKETVDSYIKRAKLIQHTVLYKDNIAIAS
LPENEEEYFDQVLIAQAADSLLSMSEVEASFAVARRDEQTVCISARSLGEVNVQIIMEALEGGGHLTNAATQLSGISVSE
ALERLKHAIDEYFEGGVQR
>Mature_658_residues
PSFYEKPLFRYPIYALIALSIITILISFYFNWILGTVEVLLLAVILFFIKRADSLIRQEIDAYISTLSYRLKKVGEEALM
EMPIGIMLFNDQYYIEWANPFLSSCFNESTLVGRSLYDTCESVVPLIKQEVESETVTLNDRKFRVVIKRDERLLYFFDVT
EQIQIEKLYENERTVLAYIFLDNYDDVTQGLDDQTRSTMNSQVTSLLNAWAQEYGIFLKRTSSERFIAVLNEHILTELEN
SKFSILDEVREKTSFDGVALTLSVGVGASVSSLKELGDLAQSSLDLALGRGGDQVAIKLPNGKVKFYGGKTNPMEKRTRV
RARVISHALKEIVTESSNVIIMGHKFPDMDSIGAAIGILKVAQANNKDGFIVIDPNQIGSSVQRLIGEIKKYEELWSRFI
TPEEAMEISNDDTLLVIVDTHKPSLVMEERLVNKIEHIVVIDHHRRGEEFIRDPLLVYMEPYASSTAELVTELLEYQPKR
LKINMIEATALLAGIIVDTKSFSLRTGSRTFDAASYLRAKGADTVLVQKFLKETVDSYIKRAKLIQHTVLYKDNIAIASL
PENEEEYFDQVLIAQAADSLLSMSEVEASFAVARRDEQTVCISARSLGEVNVQIIMEALEGGGHLTNAATQLSGISVSEA
LERLKHAIDEYFEGGVQR

Specific function: Unknown

COG id: COG3887

COG function: function code T; Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYBT_BACSU (P37484)

Other databases:

- EMBL:   D26185
- EMBL:   AL009126
- PIR:   S65976
- RefSeq:   NP_391931.1
- ProteinModelPortal:   P37484
- EnsemblBacteria:   EBBACT00000000274
- GeneID:   937816
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40510
- NMPDR:   fig|224308.1.peg.4057
- GenoList:   BSU40510
- GeneTree:   EBGT00050000001210
- HOGENOM:   HBG704093
- OMA:   SKAADTM
- ProtClustDB:   CLSK2484792
- BioCyc:   BSUB:BSU40510-MONOMER
- InterPro:   IPR000160
- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR014528
- PIRSF:   PIRSF026583
- SMART:   SM00267

Pfam domain/function: PF01368 DHH; PF02272 DHHA1

EC number: NA

Molecular weight: Translated: 74326; Mature: 74195

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSFYEKPLFRYPIYALIALSIITILISFYFNWILGTVEVLLLAVILFFIKRADSLIRQE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDAYISTLSYRLKKVGEEALMEMPIGIMLFNDQYYIEWANPFLSSCFNESTLVGRSLYDT
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCHHHHHHCCCCHHHHHHHHHH
CESVVPLIKQEVESETVTLNDRKFRVVIKRDERLLYFFDVTEQIQIEKLYENERTVLAYI
HHHHHHHHHHHHCCCEEEECCCEEEEEEEECCEEEEEEECCCHHHHHHHHCCCCEEEEEE
FLDNYDDVTQGLDDQTRSTMNSQVTSLLNAWAQEYGIFLKRTSSERFIAVLNEHILTELE
EECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHC
NSKFSILDEVREKTSFDGVALTLSVGVGASVSSLKELGDLAQSSLDLALGRGGDQVAIKL
CCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
PNGKVKFYGGKTNPMEKRTRVRARVISHALKEIVTESSNVIIMGHKFPDMDSIGAAIGIL
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
KVAQANNKDGFIVIDPNQIGSSVQRLIGEIKKYEELWSRFITPEEAMEISNDDTLLVIVD
HHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEE
THKPSLVMEERLVNKIEHIVVIDHHRRGEEFIRDPLLVYMEPYASSTAELVTELLEYQPK
CCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC
RLKINMIEATALLAGIIVDTKSFSLRTGSRTFDAASYLRAKGADTVLVQKFLKETVDSYI
EEEEEHHHHHHHHHHHHEECCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
KRAKLIQHTVLYKDNIAIASLPENEEEYFDQVLIAQAADSLLSMSEVEASFAVARRDEQT
HHHHHHHHHHEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VCISARSLGEVNVQIIMEALEGGGHLTNAATQLSGISVSEALERLKHAIDEYFEGGVQR
EEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PSFYEKPLFRYPIYALIALSIITILISFYFNWILGTVEVLLLAVILFFIKRADSLIRQE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDAYISTLSYRLKKVGEEALMEMPIGIMLFNDQYYIEWANPFLSSCFNESTLVGRSLYDT
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCHHHHHHCCCCHHHHHHHHHH
CESVVPLIKQEVESETVTLNDRKFRVVIKRDERLLYFFDVTEQIQIEKLYENERTVLAYI
HHHHHHHHHHHHCCCEEEECCCEEEEEEEECCEEEEEEECCCHHHHHHHHCCCCEEEEEE
FLDNYDDVTQGLDDQTRSTMNSQVTSLLNAWAQEYGIFLKRTSSERFIAVLNEHILTELE
EECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHC
NSKFSILDEVREKTSFDGVALTLSVGVGASVSSLKELGDLAQSSLDLALGRGGDQVAIKL
CCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
PNGKVKFYGGKTNPMEKRTRVRARVISHALKEIVTESSNVIIMGHKFPDMDSIGAAIGIL
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
KVAQANNKDGFIVIDPNQIGSSVQRLIGEIKKYEELWSRFITPEEAMEISNDDTLLVIVD
HHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEE
THKPSLVMEERLVNKIEHIVVIDHHRRGEEFIRDPLLVYMEPYASSTAELVTELLEYQPK
CCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC
RLKINMIEATALLAGIIVDTKSFSLRTGSRTFDAASYLRAKGADTVLVQKFLKETVDSYI
EEEEEHHHHHHHHHHHHEECCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
KRAKLIQHTVLYKDNIAIASLPENEEEYFDQVLIAQAADSLLSMSEVEASFAVARRDEQT
HHHHHHHHHHEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VCISARSLGEVNVQIIMEALEGGGHLTNAATQLSGISVSEALERLKHAIDEYFEGGVQR
EEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377