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The map label for this gene is yxaD

Identifier: 16081053

GI number: 16081053

Start: 4109185

End: 4109616

Strand: Reverse

Name: yxaD

Synonym: BSU40010

Alternate gene names: 16081053

Gene position: 4109616-4109185 (Counterclockwise)

Preceding gene: 255767864

Following gene: 255767861

Centisome position: 97.49

GC content: 41.2

Gene sequence:

>432_bases
TTGCAAAATCAAAATCCAGTTGAATTAATTGAATATGAGCTGACGACTTTTATCAGGAGAGCTGTTTATCTGGATCAATC
GGAGAAAAGAACAGGGAATTTGGAGAGATCTTCGTACTTATTACTGAGACAATTGGATGAGTTTGGGCCTGCTCGTGTTA
AGGAATTGGCTGAATCGTTTAAGCTTGATATTTCTACTCTTTCAAGACAAGCAGCTGCATTAGAGGCAAAGGAGCTCATC
TATCGTTTCTCAGACCCGTCTGATGGGAGAGTCAGCCTGTTTACCATTACAAAACTCGGCAAACAACTATTAAAAGCCGA
TCAGCAAAAGCGCCTTGAACGTTATGAACAGATGCTGAAAGAATGGTCAACACAGGAAAAAGAGATGTTCGGCGAGCTGC
TGCAGCGTATGAACAAGGCTTTTATCGATTAA

Upstream 100 bases:

>100_bases
TCATATAACGACTTGTATTTATTCAGTTAATGTACATTTGTATTATACAAGTATATATGATGTTGTCAATGCCGGAGATT
GGAATAGGGAGCGAGAGCGA

Downstream 100 bases:

>100_bases
CAGCTGAAAAACCCATGGTTCGCTGGAACAGCATGGGTTTTTCTTATGGTCAGAGATTATCTGCATCGTTTGGCGGCAGC
CCAAGCCACTAGTCCGGCAA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MQNQNPVELIEYELTTFIRRAVYLDQSEKRTGNLERSSYLLLRQLDEFGPARVKELAESFKLDISTLSRQAAALEAKELI
YRFSDPSDGRVSLFTITKLGKQLLKADQQKRLERYEQMLKEWSTQEKEMFGELLQRMNKAFID

Sequences:

>Translated_143_residues
MQNQNPVELIEYELTTFIRRAVYLDQSEKRTGNLERSSYLLLRQLDEFGPARVKELAESFKLDISTLSRQAAALEAKELI
YRFSDPSDGRVSLFTITKLGKQLLKADQQKRLERYEQMLKEWSTQEKEMFGELLQRMNKAFID
>Mature_143_residues
MQNQNPVELIEYELTTFIRRAVYLDQSEKRTGNLERSSYLLLRQLDEFGPARVKELAESFKLDISTLSRQAAALEAKELI
YRFSDPSDGRVSLFTITKLGKQLLKADQQKRLERYEQMLKEWSTQEKEMFGELLQRMNKAFID

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXAD_BACSU (P42103)

Other databases:

- EMBL:   AB005554
- EMBL:   AL009126
- PIR:   D70071
- RefSeq:   NP_391881.1
- ProteinModelPortal:   P42103
- SMR:   P42103
- EnsemblBacteria:   EBBACT00000002103
- GeneID:   937699
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40010
- NMPDR:   fig|224308.1.peg.4007
- GenoList:   BSU40010
- GeneTree:   EBGT00050000001094
- HOGENOM:   HBG670803
- OMA:   LDRSAYL
- ProtClustDB:   CLSK888183
- BioCyc:   BSUB:BSU40010-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00598
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 16844; Mature: 16844

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNQNPVELIEYELTTFIRRAVYLDQSEKRTGNLERSSYLLLRQLDEFGPARVKELAESF
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
KLDISTLSRQAAALEAKELIYRFSDPSDGRVSLFTITKLGKQLLKADQQKRLERYEQMLK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWSTQEKEMFGELLQRMNKAFID
HHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNQNPVELIEYELTTFIRRAVYLDQSEKRTGNLERSSYLLLRQLDEFGPARVKELAESF
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
KLDISTLSRQAAALEAKELIYRFSDPSDGRVSLFTITKLGKQLLKADQQKRLERYEQMLK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWSTQEKEMFGELLQRMNKAFID
HHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377