Click here to switch to the map view.

The map label for this gene is yxiF

Identifier: 16080972

GI number: 16080972

Start: 4022258

End: 4022728

Strand: Reverse

Name: yxiF

Synonym: BSU39210

Alternate gene names: 16080972

Gene position: 4022728-4022258 (Counterclockwise)

Preceding gene: 16080973

Following gene: 16080971

Centisome position: 95.42

GC content: 41.19

Gene sequence:

>471_bases
ATGCAAAAAAGATTGATCGAAAAACTCGCCGAGAATAAAAGACGTTTATTGATGAGCGAAATCAAAGAAAAACTAGTCCC
TTGTGCAGAAAGAGGCTTCACTTATCGTTTTGCTGATCTGGCGCAAAGCAGGCAATTGCTTGAGCTGGTTTTATCAAATT
CAATACCAGCCAACACCCGTGAGGTTGATGCCCTCGAAAAAACGGAAGCGAAACAGCTGATCTGGAAAATATCTCAGTCA
TATGTTGCTTACGATGACCGGGACGTTCTGCTGTTTCATCAATACAGCAGCGAAATTGGTGCGTTAGTTTGTTCTTTTGG
AAAATGTCTCGAGCACCTTGACTGCTTATTGGAGTGTATTGAGTTCGATGAAGGGATTCTCAATCATAGTTTTATTTTGG
TTGAGCCTAAGTGCCAGTTTGGTTTATGTATATTGCACACGGAATACGGATGTGAGCTTGTTTATTGGTAG

Upstream 100 bases:

>100_bases
TTTTTTAGAACAAATCTAAACATGAACGACAACGAAAACAAGAGAATGATGAATCAATTTAAAAGAAGTTGAGAAATTGA
CAGCGGAGGGAATGCGGCTC

Downstream 100 bases:

>100_bases
ATTGGAAACCTTTTGGAACATATCTTTTACGGAAAAAGCTTCAATATCTAAATATCAGTACGGTGCTTTGCATACTAATA
AAAAATCATTTAGTACTTGA

Product: phage reverse transcriptase or polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MQKRLIEKLAENKRRLLMSEIKEKLVPCAERGFTYRFADLAQSRQLLELVLSNSIPANTREVDALEKTEAKQLIWKISQS
YVAYDDRDVLLFHQYSSEIGALVCSFGKCLEHLDCLLECIEFDEGILNHSFILVEPKCQFGLCILHTEYGCELVYW

Sequences:

>Translated_156_residues
MQKRLIEKLAENKRRLLMSEIKEKLVPCAERGFTYRFADLAQSRQLLELVLSNSIPANTREVDALEKTEAKQLIWKISQS
YVAYDDRDVLLFHQYSSEIGALVCSFGKCLEHLDCLLECIEFDEGILNHSFILVEPKCQFGLCILHTEYGCELVYW
>Mature_156_residues
MQKRLIEKLAENKRRLLMSEIKEKLVPCAERGFTYRFADLAQSRQLLELVLSNSIPANTREVDALEKTEAKQLIWKISQS
YVAYDDRDVLLFHQYSSEIGALVCSFGKCLEHLDCLLECIEFDEGILNHSFILVEPKCQFGLCILHTEYGCELVYW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXIF_BACSU (P42298)

Other databases:

- EMBL:   D31856
- EMBL:   D83026
- EMBL:   D29985
- EMBL:   AL009126
- PIR:   B70077
- RefSeq:   NP_391800.1
- ProteinModelPortal:   P42298
- EnsemblBacteria:   EBBACT00000002236
- GeneID:   937519
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU39210
- NMPDR:   fig|224308.1.peg.3926
- GenoList:   BSU39210
- ProtClustDB:   CLSK2752568
- BioCyc:   BSUB:BSU39210-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18110; Mature: 18110

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKRLIEKLAENKRRLLMSEIKEKLVPCAERGFTYRFADLAQSRQLLELVLSNSIPANTR
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEHHHHHHHHHHHHHHHHHCCCCCCCH
EVDALEKTEAKQLIWKISQSYVAYDDRDVLLFHQYSSEIGALVCSFGKCLEHLDCLLECI
HHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFDEGILNHSFILVEPKCQFGLCILHTEYGCELVYW
HHHCCHHCCCEEEECCCCCCCEEEEEECCCCEEECC
>Mature Secondary Structure
MQKRLIEKLAENKRRLLMSEIKEKLVPCAERGFTYRFADLAQSRQLLELVLSNSIPANTR
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEHHHHHHHHHHHHHHHHHCCCCCCCH
EVDALEKTEAKQLIWKISQSYVAYDDRDVLLFHQYSSEIGALVCSFGKCLEHLDCLLECI
HHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFDEGILNHSFILVEPKCQFGLCILHTEYGCELVYW
HHHCCHHCCCEEEECCCCCCCEEEEEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704263; 8969509; 9384377