Click here to switch to the map view.

The map label for this gene is yxkF

Identifier: 16080933

GI number: 16080933

Start: 3985351

End: 3986244

Strand: Reverse

Name: yxkF

Synonym: BSU38820

Alternate gene names: 16080933

Gene position: 3986244-3985351 (Counterclockwise)

Preceding gene: 16080935

Following gene: 16080932

Centisome position: 94.56

GC content: 42.95

Gene sequence:

>894_bases
ATGAAATCGCTGCTGGCTATTTATCCCGGTTCGATTGTGTCTGAGGAGCTTTGCATAAGGGAAGGCTGTCTATGTTTTTT
TGATGAGAGCAATCAGAGATATATCTCCATTCCGAAAACAGAGATCAGTGAAAAAGAAGTATTGGTGCTGCAGTCATTTT
TGACGCCTGCGGATGAGGGCAATCAACTGTCTATGAAATCACCTGAGGAAAACAAGTGGTTTTCGTTCCTTTTTTCCAGA
GGGGAATTGCCGGCGTATATAAAGAAACGGACGAGATTTGTTCACTTTCATTTATTCGGCAAAATAGAAAGGACGTCCTT
TACGGAAGCGGTTCGCCATTTTTGGCCGGTGTCTTTTGTGATTGTGTGGATCCATGAGGACAGAGGTGTGATTGTCGAGC
AGGAAAGTGAAGCGGCGGCGGAGAAGGACGAACTGGAATCGCTCGCTAAGGTTCTTGAAAGTGATTTCTACTTCAGTGTC
CGTTTTTACGCCGGAAGATTTTACGAGCCGGATGAGTGTCTGCGAAAACATTACGCTCGTGAACAGGCGTATTTCCTGTT
TGCTGAAAAACGGCTGCCTCAGGTGCAGAGTGTGACCTTTGAGATGATCTTTCCTTTTCTATTATTAGAAACAGAAAAAG
AAAAACTGGAAACACTGCTCTCTGAAGAAGCTGAGCTTTTATTTGGAAGTGAATCTGAGCTAAGGAAGACCATTAAGCTG
TTTATTGAAAACAACTCAAACGTCACATTAACAGCGAAAAAGCTGCATCTGCATCGCAACAGCCTGCAATATCGGATTGA
TAAATTTATTGAGCGGTCAGGGATAGATATCAAATCGTACAAAGGCGCGCTTCTTGCCTATTTTATCTGCCTGCAAAATG
AAAGTTCAGAATAA

Upstream 100 bases:

>100_bases
TTCTCGTCTATCTATACCGGATATACTCTTTTTTAGTGGAGAACATGTGTGTTTCGCCTTATACTGAATATACAGATCCT
TACATAAGAGAGGAGACTCT

Downstream 100 bases:

>100_bases
ATTGGAAATATGCACGAAAAATGGCTGGGTGATTTTATGAACGCTGCCCATTTTAGCGAGAGGGAATTGCTGTTACACTC
AATATAAGAAAGCGTTTACA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKSLLAIYPGSIVSEELCIREGCLCFFDESNQRYISIPKTEISEKEVLVLQSFLTPADEGNQLSMKSPEENKWFSFLFSR
GELPAYIKKRTRFVHFHLFGKIERTSFTEAVRHFWPVSFVIVWIHEDRGVIVEQESEAAAEKDELESLAKVLESDFYFSV
RFYAGRFYEPDECLRKHYAREQAYFLFAEKRLPQVQSVTFEMIFPFLLLETEKEKLETLLSEEAELLFGSESELRKTIKL
FIENNSNVTLTAKKLHLHRNSLQYRIDKFIERSGIDIKSYKGALLAYFICLQNESSE

Sequences:

>Translated_297_residues
MKSLLAIYPGSIVSEELCIREGCLCFFDESNQRYISIPKTEISEKEVLVLQSFLTPADEGNQLSMKSPEENKWFSFLFSR
GELPAYIKKRTRFVHFHLFGKIERTSFTEAVRHFWPVSFVIVWIHEDRGVIVEQESEAAAEKDELESLAKVLESDFYFSV
RFYAGRFYEPDECLRKHYAREQAYFLFAEKRLPQVQSVTFEMIFPFLLLETEKEKLETLLSEEAELLFGSESELRKTIKL
FIENNSNVTLTAKKLHLHRNSLQYRIDKFIERSGIDIKSYKGALLAYFICLQNESSE
>Mature_297_residues
MKSLLAIYPGSIVSEELCIREGCLCFFDESNQRYISIPKTEISEKEVLVLQSFLTPADEGNQLSMKSPEENKWFSFLFSR
GELPAYIKKRTRFVHFHLFGKIERTSFTEAVRHFWPVSFVIVWIHEDRGVIVEQESEAAAEKDELESLAKVLESDFYFSV
RFYAGRFYEPDECLRKHYAREQAYFLFAEKRLPQVQSVTFEMIFPFLLLETEKEKLETLLSEEAELLFGSESELRKTIKL
FIENNSNVTLTAKKLHLHRNSLQYRIDKFIERSGIDIKSYKGALLAYFICLQNESSE

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXKF_BACSU (P94359)

Other databases:

- EMBL:   D83026
- EMBL:   AL009126
- PIR:   H70080
- RefSeq:   NP_391761.1
- ProteinModelPortal:   P94359
- SMR:   P94359
- EnsemblBacteria:   EBBACT00000001697
- GeneID:   937413
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38820
- NMPDR:   fig|224308.1.peg.3887
- GenoList:   BSU38820
- GeneTree:   EBGT00050000001504
- HOGENOM:   HBG338464
- OMA:   HLHRNSL
- ProtClustDB:   CLSK888126
- BioCyc:   BSUB:BSU38820-MONOMER
- InterPro:   IPR009057

Pfam domain/function: SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 34819; Mature: 34819

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLLAIYPGSIVSEELCIREGCLCFFDESNQRYISIPKTEISEKEVLVLQSFLTPADEG
CCCEEEECCCCHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCCCC
NQLSMKSPEENKWFSFLFSRGELPAYIKKRTRFVHFHLFGKIERTSFTEAVRHFWPVSFV
CEECCCCCCCCHHHHHHHHCCCCCHHHHHCCEEEEEEEECCCCHHHHHHHHHHHCCEEEE
IVWIHEDRGVIVEQESEAAAEKDELESLAKVLESDFYFSVRFYAGRFYEPDECLRKHYAR
EEEEECCCCEEEECCHHHHCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHH
EQAYFLFAEKRLPQVQSVTFEMIFPFLLLETEKEKLETLLSEEAELLFGSESELRKTIKL
HHHEEEEEHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHEEECCHHHHHHHHHE
FIENNSNVTLTAKKLHLHRNSLQYRIDKFIERSGIDIKSYKGALLAYFICLQNESSE
EEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHEEEECCCCCC
>Mature Secondary Structure
MKSLLAIYPGSIVSEELCIREGCLCFFDESNQRYISIPKTEISEKEVLVLQSFLTPADEG
CCCEEEECCCCHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCCCC
NQLSMKSPEENKWFSFLFSRGELPAYIKKRTRFVHFHLFGKIERTSFTEAVRHFWPVSFV
CEECCCCCCCCHHHHHHHHCCCCCHHHHHCCEEEEEEEECCCCHHHHHHHHHHHCCEEEE
IVWIHEDRGVIVEQESEAAAEKDELESLAKVLESDFYFSVRFYAGRFYEPDECLRKHYAR
EEEEECCCCEEEECCHHHHCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHH
EQAYFLFAEKRLPQVQSVTFEMIFPFLLLETEKEKLETLLSEEAELLFGSESELRKTIKL
HHHEEEEEHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHEEECCHHHHHHHHHE
FIENNSNVTLTAKKLHLHRNSLQYRIDKFIERSGIDIKSYKGALLAYFICLQNESSE
EEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377