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The map label for this gene is rocB

Identifier: 16080829

GI number: 16080829

Start: 3877192

End: 3878892

Strand: Reverse

Name: rocB

Synonym: BSU37770

Alternate gene names: 16080829

Gene position: 3878892-3877192 (Counterclockwise)

Preceding gene: 16080830

Following gene: 16080828

Centisome position: 92.01

GC content: 44.33

Gene sequence:

>1701_bases
ATGCAGTATACAAAAATCAGTCACATGAATCCGGCTGAAAGAGTGGAGGCGCTGACAGCATCTCTGGTCAGCCTCAGCAG
CGTGAACGGCACCGTTGGAGAAGGGACAAAAGCAGATTTCATCAAAGAAGTGATCACGAGCTATCCTTATTTTCAGGAAA
ACCCCAGTCATGTGTGGGAACAGGCCATTCCCAATGACCCATACAAACGCAAAAATATTTTTGCGTTTATTAAAGGACAT
GGAGAAAGCCGAAATACAGTCATTTACCATGCCCATCTGGATACAGTTGGAATTGAAGATTTCGGCCCTTTAAAGGATAT
CGCTTTTGATTGTGAGAAATTGGCCGAGTATTTCAGCCGCTATGAGTTCGATCAGGATGTTCAGCGGGATGCCAAATCAG
GCGAGTGGATGTTCGGAAGAGGATCTGTCGATATGCAAAGCGGCATCGCCGTGCATTTAGCCAATCTCCTGCATTTTTCG
GAGAACCTTGAGACGTTGCCGGGAAATGTATTGTTTATGGCCAATCCCGATGAGGAGAGCCAGCATTCGGGCATTCTCGC
CAGCATTTCAGAGCTGAACCGGCTAAAAAAAGAAAAACAGCTTCACTATTTGGCTGCTATTAATACGGATTTTATTACCC
CGCTTTACGATGGTGATCAGACAAGATATATCTATACCGGAGCCGCGGGAAAACTGTTGCCTTGCTTTTACATTTACGGG
CGTGAAGTCCATGTTGGCGATACACTGGCAGGGATTGACCCAAATTTCATTTCATCTGAAATCACAAGCCGTCTCCACAA
TAACATCCATCTGGCAGAAAAGGTTGAAGGGGAGTTGGTTCTGCCCCCATCCTGTTTGTATCAGCGTGATAACAAGGAAT
CCTATAATGTGCAAACGGCTGTCAGCACCAGCTTGTATTTCAATTGTTTTATTTATGAAAGAACAGCAAAAGAAATGATG
GATTTGCTTATTGAAGTCACTGAGGAAGCATGCCGGGAGACAGAACAAAAATTATCAGATTATTACGAAGAATATGTAAA
AAGAGCCAACCTGCCAAAGAAACATTTATCATGGGGCATTCAAGTGTATAGCCTGGAGCAATACTTAGAAAAGCTGAGAA
ACCGGGGAATAGATCCCGAGCAGTGTATCGAGCAGACATTCAAAGCCAACGAGCACCTTGAACTTCGCATGAGATGCTTT
CAGGCAATCGAAGAGCTTCAAAAGCTTGACCCCGATCAAGGCGCAAAAGTCATTCTATTTTACGCACCTCCTTACCTGCC
GCATAACTATTTGAAAGAAGATAGCGCAAGAGATCAGCTTTTGCAGCATGTGATTAAAGAAGCGGCTGACAAAACCGCTG
AATCGACAGGCGAAACATTTGTCTTCAAAAAGTTTTTCCCCTACTTGGCAGACGGCAGTTTTTTATCACTGCACGAAACC
GATGGCGAAATTGATTCTTTTATCAGGAACTTCCCTGGGTGGAATATGATTGGGACCATTCCGTTCAAAGACATACGCAA
GCTGAATATTCCATCCATTAATATGGGCGTGTACGGAAAAGACGGCCATAAATGGACAGAACGAGTCTATAAACCGTACA
CATTTCATGTATTGCCTCTCCTCATACAGCAAACCACCGTTCATCTTTTGCAAAGCTACCGGATGACCATCACGGCAAAA
GAACCAAAGGGGGAAGGATGA

Upstream 100 bases:

>100_bases
GCCAAAACAACGTCCGAAGCTTTTTGATTTGAGAGAAATAAAATCGTGCGATTCTTTAGCGGATCGCACGATTTCAACTT
TTTGATCAGGAGGACAATTT

Downstream 100 bases:

>100_bases
TGCAGAATCATAAAAATGAATTGCAGCGCAGCATGAAAAGCAGGCATTTGTTTATGATTGCTTTGGGAGGGGTGATTGGC
ACTGGGCTGTTTCTAGGCTC

Product: N-deacylase involved in arginine and ornithine utilization

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 566

Protein sequence:

>566_residues
MQYTKISHMNPAERVEALTASLVSLSSVNGTVGEGTKADFIKEVITSYPYFQENPSHVWEQAIPNDPYKRKNIFAFIKGH
GESRNTVIYHAHLDTVGIEDFGPLKDIAFDCEKLAEYFSRYEFDQDVQRDAKSGEWMFGRGSVDMQSGIAVHLANLLHFS
ENLETLPGNVLFMANPDEESQHSGILASISELNRLKKEKQLHYLAAINTDFITPLYDGDQTRYIYTGAAGKLLPCFYIYG
REVHVGDTLAGIDPNFISSEITSRLHNNIHLAEKVEGELVLPPSCLYQRDNKESYNVQTAVSTSLYFNCFIYERTAKEMM
DLLIEVTEEACRETEQKLSDYYEEYVKRANLPKKHLSWGIQVYSLEQYLEKLRNRGIDPEQCIEQTFKANEHLELRMRCF
QAIEELQKLDPDQGAKVILFYAPPYLPHNYLKEDSARDQLLQHVIKEAADKTAESTGETFVFKKFFPYLADGSFLSLHET
DGEIDSFIRNFPGWNMIGTIPFKDIRKLNIPSINMGVYGKDGHKWTERVYKPYTFHVLPLLIQQTTVHLLQSYRMTITAK
EPKGEG

Sequences:

>Translated_566_residues
MQYTKISHMNPAERVEALTASLVSLSSVNGTVGEGTKADFIKEVITSYPYFQENPSHVWEQAIPNDPYKRKNIFAFIKGH
GESRNTVIYHAHLDTVGIEDFGPLKDIAFDCEKLAEYFSRYEFDQDVQRDAKSGEWMFGRGSVDMQSGIAVHLANLLHFS
ENLETLPGNVLFMANPDEESQHSGILASISELNRLKKEKQLHYLAAINTDFITPLYDGDQTRYIYTGAAGKLLPCFYIYG
REVHVGDTLAGIDPNFISSEITSRLHNNIHLAEKVEGELVLPPSCLYQRDNKESYNVQTAVSTSLYFNCFIYERTAKEMM
DLLIEVTEEACRETEQKLSDYYEEYVKRANLPKKHLSWGIQVYSLEQYLEKLRNRGIDPEQCIEQTFKANEHLELRMRCF
QAIEELQKLDPDQGAKVILFYAPPYLPHNYLKEDSARDQLLQHVIKEAADKTAESTGETFVFKKFFPYLADGSFLSLHET
DGEIDSFIRNFPGWNMIGTIPFKDIRKLNIPSINMGVYGKDGHKWTERVYKPYTFHVLPLLIQQTTVHLLQSYRMTITAK
EPKGEG
>Mature_566_residues
MQYTKISHMNPAERVEALTASLVSLSSVNGTVGEGTKADFIKEVITSYPYFQENPSHVWEQAIPNDPYKRKNIFAFIKGH
GESRNTVIYHAHLDTVGIEDFGPLKDIAFDCEKLAEYFSRYEFDQDVQRDAKSGEWMFGRGSVDMQSGIAVHLANLLHFS
ENLETLPGNVLFMANPDEESQHSGILASISELNRLKKEKQLHYLAAINTDFITPLYDGDQTRYIYTGAAGKLLPCFYIYG
REVHVGDTLAGIDPNFISSEITSRLHNNIHLAEKVEGELVLPPSCLYQRDNKESYNVQTAVSTSLYFNCFIYERTAKEMM
DLLIEVTEEACRETEQKLSDYYEEYVKRANLPKKHLSWGIQVYSLEQYLEKLRNRGIDPEQCIEQTFKANEHLELRMRCF
QAIEELQKLDPDQGAKVILFYAPPYLPHNYLKEDSARDQLLQHVIKEAADKTAESTGETFVFKKFFPYLADGSFLSLHET
DGEIDSFIRNFPGWNMIGTIPFKDIRKLNIPSINMGVYGKDGHKWTERVYKPYTFHVLPLLIQQTTVHLLQSYRMTITAK
EPKGEG

Specific function: Involved in arginine degradative pathway

COG id: COG4187

COG function: function code E; Arginine degradation protein (predicted deacylase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ROCB_BACSU (P39635)

Other databases:

- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S39732
- RefSeq:   NP_391657.1
- ProteinModelPortal:   P39635
- SMR:   P39635
- EnsemblBacteria:   EBBACT00000000034
- GeneID:   937220
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37770
- NMPDR:   fig|224308.1.peg.3783
- GenoList:   BSU37770
- GeneTree:   EBGT00050000002515
- HOGENOM:   HBG697538
- OMA:   HKWTERV
- ProtClustDB:   CLSK2460965
- BioCyc:   BSUB:BSU37770-MONOMER
- InterPro:   IPR002933
- InterPro:   IPR012166
- PIRSF:   PIRSF010386

Pfam domain/function: PF01546 Peptidase_M20

EC number: NA

Molecular weight: Translated: 64910; Mature: 64910

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYTKISHMNPAERVEALTASLVSLSSVNGTVGEGTKADFIKEVITSYPYFQENPSHVWE
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH
QAIPNDPYKRKNIFAFIKGHGESRNTVIYHAHLDTVGIEDFGPLKDIAFDCEKLAEYFSR
HHCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
YEFDQDVQRDAKSGEWMFGRGSVDMQSGIAVHLANLLHFSENLETLPGNVLFMANPDEES
CCCCHHHHHHCCCCCEEEECCCCCHHCCHHHHHHHHHHHHHCHHCCCCCEEEEECCCCCC
QHSGILASISELNRLKKEKQLHYLAAINTDFITPLYDGDQTRYIYTGAAGKLLPCFYIYG
HHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEC
REVHVGDTLAGIDPNFISSEITSRLHNNIHLAEKVEGELVLPPSCLYQRDNKESYNVQTA
CEEECCCCCCCCCCHHHHHHHHHHHHCCCEEHHHCCCCEECCHHHHHCCCCCCCCEEEHE
VSTSLYFNCFIYERTAKEMMDLLIEVTEEACRETEQKLSDYYEEYVKRANLPKKHLSWGI
EEHEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCE
QVYSLEQYLEKLRNRGIDPEQCIEQTFKANEHLELRMRCFQAIEELQKLDPDQGAKVILF
EEEEHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
YAPPYLPHNYLKEDSARDQLLQHVIKEAADKTAESTGETFVFKKFFPYLADGSFLSLHET
ECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCEEEEECC
DGEIDSFIRNFPGWNMIGTIPFKDIRKLNIPSINMGVYGKDGHKWTERVYKPYTFHVLPL
CCHHHHHHHHCCCCCEEECCCHHHHHCCCCCEECCCEECCCCHHHHHHHCCCCHHHHHHH
LIQQTTVHLLQSYRMTITAKEPKGEG
HHHHHHHHHHHHCCEEEEECCCCCCC
>Mature Secondary Structure
MQYTKISHMNPAERVEALTASLVSLSSVNGTVGEGTKADFIKEVITSYPYFQENPSHVWE
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH
QAIPNDPYKRKNIFAFIKGHGESRNTVIYHAHLDTVGIEDFGPLKDIAFDCEKLAEYFSR
HHCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
YEFDQDVQRDAKSGEWMFGRGSVDMQSGIAVHLANLLHFSENLETLPGNVLFMANPDEES
CCCCHHHHHHCCCCCEEEECCCCCHHCCHHHHHHHHHHHHHCHHCCCCCEEEEECCCCCC
QHSGILASISELNRLKKEKQLHYLAAINTDFITPLYDGDQTRYIYTGAAGKLLPCFYIYG
HHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEC
REVHVGDTLAGIDPNFISSEITSRLHNNIHLAEKVEGELVLPPSCLYQRDNKESYNVQTA
CEEECCCCCCCCCCHHHHHHHHHHHHCCCEEHHHCCCCEECCHHHHHCCCCCCCCEEEHE
VSTSLYFNCFIYERTAKEMMDLLIEVTEEACRETEQKLSDYYEEYVKRANLPKKHLSWGI
EEHEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCE
QVYSLEQYLEKLRNRGIDPEQCIEQTFKANEHLELRMRCFQAIEELQKLDPDQGAKVILF
EEEEHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
YAPPYLPHNYLKEDSARDQLLQHVIKEAADKTAESTGETFVFKKFFPYLADGSFLSLHET
ECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCEEEEECC
DGEIDSFIRNFPGWNMIGTIPFKDIRKLNIPSINMGVYGKDGHKWTERVYKPYTFHVLPL
CCHHHHHHHHCCCCCEEECCCHHHHHCCCCCEECCCEECCCCHHHHHHHCCCCHHHHHHH
LIQQTTVHLLQSYRMTITAKEPKGEG
HHHHHHHHHHHHCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377