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The map label for this gene is ywhH

Identifier: 16080800

GI number: 16080800

Start: 3847348

End: 3847821

Strand: Direct

Name: ywhH

Synonym: BSU37480

Alternate gene names: 16080800

Gene position: 3847348-3847821 (Clockwise)

Preceding gene: 16080799

Following gene: 255767792

Centisome position: 91.26

GC content: 45.57

Gene sequence:

>474_bases
ATGTCTCTAAAAAGTGTGAGAACCCACTTTACTCAATGGAATCGAGAAAATGATGTGACGGAGTTCGAAACGTCGAGTGC
GACAGTTGAACAGGCAGCTGAGACAATCGGCGTAAGCCTGTCTAGAATCGCCAAGTCCCTGTCCTTCAGAGGGGAAGGAG
ATCAGGTGATTCTGATTGTGGCAGCCGGCGATGCCAAGATCGACAACAAAAAGTCCAGGCAAACATTTGGCTTTAAAGCA
AGAATGCTCTCTCCTAATGAGGTGCTGGAGCAGACAGGCCATGAAATTGGAGGAGTTTGCCCATTTGGATTGGCTCATGA
TCCTGAGGTTTATCTTGATGTATCGCTGAAACGGTTTCAGACTGTTTTCCCCGCATGCGGCAGCAGAAACTCCGCTATTG
AATTAACACCGAAAGAATTATCCGAATTTTCTTTCTCAAAAGTGTGGATTGATGTTTGTAAAGACTGGGAATAA

Upstream 100 bases:

>100_bases
AACCGCCGTCCATCGGCGGTTTTTTCGTCCCCTCTTTACCAAAGTCTCCCAATCCATGCTATGATCTTTTCAATAATCTT
GAAGAGAGTGGAAATGCAGC

Downstream 100 bases:

>100_bases
AAAAACATCCAGACATCGTCTGGATGTTTACTTATTTCACAAACCCAAGCAGCATTTCACGGATGATTTTGCTGGCTGTG
TTTGCCGTTTGCTCTGAGTG

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSLKSVRTHFTQWNRENDVTEFETSSATVEQAAETIGVSLSRIAKSLSFRGEGDQVILIVAAGDAKIDNKKSRQTFGFKA
RMLSPNEVLEQTGHEIGGVCPFGLAHDPEVYLDVSLKRFQTVFPACGSRNSAIELTPKELSEFSFSKVWIDVCKDWE

Sequences:

>Translated_157_residues
MSLKSVRTHFTQWNRENDVTEFETSSATVEQAAETIGVSLSRIAKSLSFRGEGDQVILIVAAGDAKIDNKKSRQTFGFKA
RMLSPNEVLEQTGHEIGGVCPFGLAHDPEVYLDVSLKRFQTVFPACGSRNSAIELTPKELSEFSFSKVWIDVCKDWE
>Mature_156_residues
SLKSVRTHFTQWNRENDVTEFETSSATVEQAAETIGVSLSRIAKSLSFRGEGDQVILIVAAGDAKIDNKKSRQTFGFKAR
MLSPNEVLEQTGHEIGGVCPFGLAHDPEVYLDVSLKRFQTVFPACGSRNSAIELTPKELSEFSFSKVWIDVCKDWE

Specific function: May Be Involved In The Suppression Of Transcription Of Usha. [C]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWHH_BACSU (P71000)

Other databases:

- EMBL:   Z80360
- EMBL:   AL009126
- PIR:   A70058
- RefSeq:   NP_391628.1
- HSSP:   Q5SHN1
- ProteinModelPortal:   P71000
- SMR:   P71000
- EnsemblBacteria:   EBBACT00000003804
- GeneID:   937183
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37480
- NMPDR:   fig|224308.1.peg.3754
- GenoList:   BSU37480
- GeneTree:   EBGT00050000002517
- HOGENOM:   HBG727700
- OMA:   RLDNRKF
- BioCyc:   BSUB:BSU37480-MONOMER
- InterPro:   IPR007214
- Gene3D:   G3DSA:3.90.960.10

Pfam domain/function: PF04073 YbaK; SSF55826 YbaK/aa-tRNA-synth-assoc-reg

EC number: NA

Molecular weight: Translated: 17475; Mature: 17344

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKSVRTHFTQWNRENDVTEFETSSATVEQAAETIGVSLSRIAKSLSFRGEGDQVILIV
CCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEE
AAGDAKIDNKKSRQTFGFKARMLSPNEVLEQTGHEIGGVCPFGLAHDPEVYLDVSLKRFQ
ECCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHCCCCCCCCCCCCCEEEEEHHHHHH
TVFPACGSRNSAIELTPKELSEFSFSKVWIDVCKDWE
HHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLKSVRTHFTQWNRENDVTEFETSSATVEQAAETIGVSLSRIAKSLSFRGEGDQVILIV
CHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEE
AAGDAKIDNKKSRQTFGFKARMLSPNEVLEQTGHEIGGVCPFGLAHDPEVYLDVSLKRFQ
ECCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHCCCCCCCCCCCCCEEEEEHHHHHH
TVFPACGSRNSAIELTPKELSEFSFSKVWIDVCKDWE
HHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377