Click here to switch to the map view.

The map label for this gene is ywiC

Identifier: 16080783

GI number: 16080783

Start: 3830761

End: 3831480

Strand: Direct

Name: ywiC

Synonym: BSU37300

Alternate gene names: 16080783

Gene position: 3830761-3831480 (Clockwise)

Preceding gene: 16080774

Following gene: 16080788

Centisome position: 90.87

GC content: 47.78

Gene sequence:

>720_bases
ATGAAGGCGCTGATTCCGAAGCAGCACGGGGCGTGGGCGATGCTGCTGATCCCATTTTTACTCGGCATGGTCAAGGGAGG
CCCCGTTATTTGGCATATTCCGCTCTTCCTTGGTTGGCTTTTCCTATACTTAGCGGTTTATCCCGTTACGCTTGCCTTAA
AAAAGAAACAAAGCAAACCATATCAAAAGTGGATGTGTTATTACGGTTTTCCCACCTGCTGCTTTTTGATGATCTCGGTC
TTTCATAAGCCGCCTCTCATCTGGGTGGGCGTTTCTTTACTGCCGCTGTTTCTCATACATATGTATTTTGCCCGCAGAAA
AAACGAACGAGCCTTATTGAATGATGTTGCAGGTGTCTTGTTCTTTTGTTCGGGCGGGTTTGCGAGCTGCTGGCTGGGGA
TGGGAACCCTTGACGGCTGGGCTTGGTTTATTTTCTTGCAGTCTGCTTTATTTTTTATCGGGAGTTCCTTTTATGTGAAA
TCGGTGATCCGCGAGAGAAAAAACAGGGCATTTGCATACTGGTCATGGGGATATCACCTGCTGCTCCCCTTTTTATCCGC
TCTTTTCGGAGCAGGATGGGCGTTTCTCGCTTTTATCCCGAGCAGCTTGCGGGCATGGTTTTTTCATGGAAGGGATTGGC
CCGTAAAAACGATTGGCATTCTGGAAATCGTGAATGCCTGCTTCTTTCTTGCCGTCATGTGCCTGTTTATCACAAGGTAA

Upstream 100 bases:

>100_bases
TGAGCCTGTACAGCAGTGATGTATTTCACAGCCTGTATGATGAATGTCACTTATCAGGAGGGTGAATGCATTTATAATGA
AAGAAAAAAGGAGGATTTCG

Downstream 100 bases:

>100_bases
AAAAACAAGGACACCGCTGTCCTTGTTTTTTTCAGTCAATATTGCAAATCTCCAGCGGGCAATTTTCACACTCAATCTCA
CATCGTAAATAGTCCCGCTT

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKALIPKQHGAWAMLLIPFLLGMVKGGPVIWHIPLFLGWLFLYLAVYPVTLALKKKQSKPYQKWMCYYGFPTCCFLMISV
FHKPPLIWVGVSLLPLFLIHMYFARRKNERALLNDVAGVLFFCSGGFASCWLGMGTLDGWAWFIFLQSALFFIGSSFYVK
SVIRERKNRAFAYWSWGYHLLLPFLSALFGAGWAFLAFIPSSLRAWFFHGRDWPVKTIGILEIVNACFFLAVMCLFITR

Sequences:

>Translated_239_residues
MKALIPKQHGAWAMLLIPFLLGMVKGGPVIWHIPLFLGWLFLYLAVYPVTLALKKKQSKPYQKWMCYYGFPTCCFLMISV
FHKPPLIWVGVSLLPLFLIHMYFARRKNERALLNDVAGVLFFCSGGFASCWLGMGTLDGWAWFIFLQSALFFIGSSFYVK
SVIRERKNRAFAYWSWGYHLLLPFLSALFGAGWAFLAFIPSSLRAWFFHGRDWPVKTIGILEIVNACFFLAVMCLFITR
>Mature_239_residues
MKALIPKQHGAWAMLLIPFLLGMVKGGPVIWHIPLFLGWLFLYLAVYPVTLALKKKQSKPYQKWMCYYGFPTCCFLMISV
FHKPPLIWVGVSLLPLFLIHMYFARRKNERALLNDVAGVLFFCSGGFASCWLGMGTLDGWAWFIFLQSALFFIGSSFYVK
SVIRERKNRAFAYWSWGYHLLLPFLSALFGAGWAFLAFIPSSLRAWFFHGRDWPVKTIGILEIVNACFFLAVMCLFITR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1626

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWIC_BACSU (P46909)

Other databases:

- EMBL:   Z49884
- EMBL:   AL009126
- PIR:   S60083
- RefSeq:   NP_391611.1
- ProteinModelPortal:   P46909
- EnsemblBacteria:   EBBACT00000001773
- GeneID:   937048
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37300
- NMPDR:   fig|224308.1.peg.3737
- GenoList:   BSU37300
- GeneTree:   EBGT00050000002359
- HOGENOM:   HBG579534
- OMA:   TIYHIPL
- ProtClustDB:   CLSK872646
- BioCyc:   BSUB:BSU37300-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27554; Mature: 27554

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x133eecf4)-; HASH(0x12e7c618)-; HASH(0x129fad40)-; HASH(0x130843e8)-; HASH(0x12a9338c)-; HASH(0x12657384)-; HASH(0x11893404)-; HASH(0x13082ac0)-;

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALIPKQHGAWAMLLIPFLLGMVKGGPVIWHIPLFLGWLFLYLAVYPVTLALKKKQSKP
CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
YQKWMCYYGFPTCCFLMISVFHKPPLIWVGVSLLPLFLIHMYFARRKNERALLNDVAGVL
HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
FFCSGGFASCWLGMGTLDGWAWFIFLQSALFFIGSSFYVKSVIRERKNRAFAYWSWGYHL
HHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHH
LLPFLSALFGAGWAFLAFIPSSLRAWFFHGRDWPVKTIGILEIVNACFFLAVMCLFITR
HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MKALIPKQHGAWAMLLIPFLLGMVKGGPVIWHIPLFLGWLFLYLAVYPVTLALKKKQSKP
CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
YQKWMCYYGFPTCCFLMISVFHKPPLIWVGVSLLPLFLIHMYFARRKNERALLNDVAGVL
HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
FFCSGGFASCWLGMGTLDGWAWFIFLQSALFFIGSSFYVKSVIRERKNRAFAYWSWGYHL
HHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHH
LLPFLSALFGAGWAFLAFIPSSLRAWFFHGRDWPVKTIGILEIVNACFFLAVMCLFITR
HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8846791; 9384377