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The map label for this gene is fdhD

Identifier: 16080724

GI number: 16080724

Start: 3773366

End: 3774154

Strand: Reverse

Name: fdhD

Synonym: BSU36710

Alternate gene names: 16080724

Gene position: 3774154-3773366 (Counterclockwise)

Preceding gene: 16080725

Following gene: 16080723

Centisome position: 89.53

GC content: 46.51

Gene sequence:

>789_bases
TTGAACGATAAAGTAACTGCGGTCAGGGATGTATGGCGCTATGAACAAGGGGAAATAAGCAAAGTAGAAGACCGGATGGT
GACGGAATTCCCTTTGACAGTGATACTGAATGGCAGTGAATTTGTGACGCTCGTTTGTACGCCTGAGCATATCGAAGAGC
TTGTCATCGGATTTCTCGCATCAGAGGGTGTTATACGATTTCAAAAAGAAATTAAAAGGTTTACAATAGATGAAAGTCTC
GGTTTTGTATATGTCGACCTCGTTCACCCTGAGACATTGGATCAAAAGGATTATACGAAACGGGTGATCGGCTCATGCTG
CGGAAAGGGCCGTCATTTTTATTTTCAGCAGGATGTCAAAACAGCCAAGACGGCTGTCAGCCAAATCAAGATATCGCCTG
AGGCATGTCTGGCGCTTATGAAAGACATGCAGCAAGGGAGCGGGACGTTTCAGGATACGGGAGGCGTCCATAATGCGGCG
CTTTGCGACACAGAGAAGCTTCTGTTGATGCGCACAGATATCGGTCGGCACAACGCACTTGATAAACTATACGGACACTG
CCTTCTAAACGGGATGTCCGTACGCGACAAACTGATTGTGTTCAGCGGCAGAATCTCATCAGAGGTCCTGTTAAAAGCGG
CCAAAATCGGCGTGTCGATTGTCATTTCCAAATCGGCCCCGACGGAGCTTGCGATTCAAATGGCTGAAGAATTGAATATC
ACAGCGATTGGATTTGTCAGAAACGGATCATTTAATGTATATACACACCCTGAGAGAATCAGGGAGTAG

Upstream 100 bases:

>100_bases
GCCCTTTATATAGAGGGCTCTTTTTGTGTCTCAGAATTCGACAAAATCCGAGGAGTGTGAAAAAATATAAAGGCAGGAAC
ATTGCGGAGGGGAAGAGACA

Downstream 100 bases:

>100_bases
GAAGGGGCTGTAGCTATGATTACAGAGTCGCGTCAGATGTTGGATAAAAGAAACAGACCGCTGAGAGACCTTCGCATTTC
TGTTACAGACCGCTGCAACT

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MNDKVTAVRDVWRYEQGEISKVEDRMVTEFPLTVILNGSEFVTLVCTPEHIEELVIGFLASEGVIRFQKEIKRFTIDESL
GFVYVDLVHPETLDQKDYTKRVIGSCCGKGRHFYFQQDVKTAKTAVSQIKISPEACLALMKDMQQGSGTFQDTGGVHNAA
LCDTEKLLLMRTDIGRHNALDKLYGHCLLNGMSVRDKLIVFSGRISSEVLLKAAKIGVSIVISKSAPTELAIQMAEELNI
TAIGFVRNGSFNVYTHPERIRE

Sequences:

>Translated_262_residues
MNDKVTAVRDVWRYEQGEISKVEDRMVTEFPLTVILNGSEFVTLVCTPEHIEELVIGFLASEGVIRFQKEIKRFTIDESL
GFVYVDLVHPETLDQKDYTKRVIGSCCGKGRHFYFQQDVKTAKTAVSQIKISPEACLALMKDMQQGSGTFQDTGGVHNAA
LCDTEKLLLMRTDIGRHNALDKLYGHCLLNGMSVRDKLIVFSGRISSEVLLKAAKIGVSIVISKSAPTELAIQMAEELNI
TAIGFVRNGSFNVYTHPERIRE
>Mature_262_residues
MNDKVTAVRDVWRYEQGEISKVEDRMVTEFPLTVILNGSEFVTLVCTPEHIEELVIGFLASEGVIRFQKEIKRFTIDESL
GFVYVDLVHPETLDQKDYTKRVIGSCCGKGRHFYFQQDVKTAKTAVSQIKISPEACLALMKDMQQGSGTFQDTGGVHNAA
LCDTEKLLLMRTDIGRHNALDKLYGHCLLNGMSVRDKLIVFSGRISSEVLLKAAKIGVSIVISKSAPTELAIQMAEELNI
TAIGFVRNGSFNVYTHPERIRE

Specific function: Necessary for formate dehydrogenase activity

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family

Homologues:

Organism=Escherichia coli, GI1790329, Length=267, Percent_Identity=28.8389513108614, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FDHD_BACSU (P39756)

Other databases:

- EMBL:   Z35277
- EMBL:   Z81356
- EMBL:   AL009126
- PIR:   B69665
- RefSeq:   NP_391552.1
- ProteinModelPortal:   P39756
- SMR:   P39756
- EnsemblBacteria:   EBBACT00000002732
- GeneID:   936976
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU36710
- NMPDR:   fig|224308.1.peg.3678
- GenoList:   BSU36710
- GeneTree:   EBGT00050000001547
- HOGENOM:   HBG732883
- OMA:   SPSTDKG
- PhylomeDB:   P39756
- ProtClustDB:   PRK00724
- BioCyc:   BSUB:BSU36710-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00187
- InterPro:   IPR003786
- TIGRFAMs:   TIGR00129

Pfam domain/function: PF02634 FdhD-NarQ

EC number: NA

Molecular weight: Translated: 29290; Mature: 29290

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDKVTAVRDVWRYEQGEISKVEDRMVTEFPLTVILNGSEFVTLVCTPEHIEELVIGFLA
CCCCHHHHHHHHHCCCCCHHHHHHHHHEECCEEEEECCCCEEEEEECHHHHHHHHHHHHH
SEGVIRFQKEIKRFTIDESLGFVYVDLVHPETLDQKDYTKRVIGSCCGKGRHFYFQQDVK
CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHH
TAKTAVSQIKISPEACLALMKDMQQGSGTFQDTGGVHNAALCDTEKLLLMRTDIGRHNAL
HHHHHHHHEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHH
DKLYGHCLLNGMSVRDKLIVFSGRISSEVLLKAAKIGVSIVISKSAPTELAIQMAEELNI
HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCE
TAIGFVRNGSFNVYTHPERIRE
EEEEEEECCEEEEEECHHHHCC
>Mature Secondary Structure
MNDKVTAVRDVWRYEQGEISKVEDRMVTEFPLTVILNGSEFVTLVCTPEHIEELVIGFLA
CCCCHHHHHHHHHCCCCCHHHHHHHHHEECCEEEEECCCCEEEEEECHHHHHHHHHHHHH
SEGVIRFQKEIKRFTIDESLGFVYVDLVHPETLDQKDYTKRVIGSCCGKGRHFYFQQDVK
CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHH
TAKTAVSQIKISPEACLALMKDMQQGSGTFQDTGGVHNAALCDTEKLLLMRTDIGRHNAL
HHHHHHHHEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHH
DKLYGHCLLNGMSVRDKLIVFSGRISSEVLLKAAKIGVSIVISKSAPTELAIQMAEELNI
HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCE
TAIGFVRNGSFNVYTHPERIRE
EEEEEEECCEEEEEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7860592; 9384377