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The map label for this gene is ywoF

Identifier: 16080699

GI number: 16080699

Start: 3750768

End: 3752174

Strand: Reverse

Name: ywoF

Synonym: BSU36460

Alternate gene names: 16080699

Gene position: 3752174-3750768 (Counterclockwise)

Preceding gene: 16080700

Following gene: 16080696

Centisome position: 89.01

GC content: 43.28

Gene sequence:

>1407_bases
ATGAGAAAATGGTATTTTATTCTTTTGGCGGGTGTTTTAACGTCTGTCATCCTCGCTTTCGTTTATGATAAGACAAAAGC
GAATGAGGAAGGATCTGGGGATTATCTGTATGTTTCGCCAAATGGCAGTGATCAAAATGAAGGAACAAAAGAAAAGCCGT
TTCGTACATTGGCACACGCATCTGAGAAGGCTGCTGCCGGCACAACTGTCATGATTCGGGAGGGCACGTATCATGAGACC
CTTGATGTAAAGCACAGCGGTACGGACGGAAAGCCTATCACATTCCGAAACTATGAAAATGAAAACGTCGTGATTAGCGG
TGAATCCGTTGCGAACGCTGAATATGAAACACCGCTTATTCGTATTCACGATAAACATGACATTGCCATCAGCGGTTTAA
CAATTCAAGATCTTTCTGTTTCATCTGAGGAAGCAACTGCTATAGGGATTTATGTATCAGGGTCCAGCAGTCATATCGCC
ATTAAGGATAATCACATCCGGGGGATTAAGACAACAGCGGATGAAGGAAATGCTCACGGAATCGCAGTTTATGGGACTGG
CAGCATGAAAGACATCCGAATCGAGGACAATACAGTTGAGAAACTGACGCTTGGAGCGAGTGAAGCAGTTGTGCTGAACG
GTAATATCGACGGCTTCACAGTTGCAGGCAATGTGGTCCGCAACAATAATAACATCGGGATTGATCTAATTGGTTATGAG
GGAACCGCGGATAAAAACGATTACGTGCGAAACGGAGTCGTAGAAAACAATACAGTTTATCAAAACTCGACTTACGGCAA
TCCTGCTTATGGAGATGAATACTCAGCGGGCGGGATTTATGTCGATGGAGGACACGATATCGAAATTAAGAACAACACAG
TTTACGATAACGATATTGGGATTGAAGCAACGTCTGAACACAAAGGAAAGTATGCAAATGCCATTCAGATCACAGACAAC
AAAGTGTACAACAATGCGTACACCGGTATTTCAATCGGAGGATATGACAAAAAGCGGGGCGGCACCAGCAATTCTCTGAT
TGCCCGCAATATTATGTACCGGAATGACACAAAGGGACTGTACGGCGGACAGCTGCTGCTGCAGTACGATACGAAAAACA
ACACAATTGAAAAGAATATATTGACGGCCGGTGATTCCAGATTATTTATCGGAAACGACTTTACAGAAAACGAAGGTAAT
ACGGTCAATCATAACGTGTACCACAAGGAAGCGGATCAAGACGGCATATGGATGTGGAAAAAGAAAGAATATGATTCATT
TTCTTCGTATCGAAAAGCAACAAAAAACGATCAACAATCCATATATGCCGATCCGATGTTTCGTGATGAAGCGTCCTATG
ATTTTTCGTTAGATCCTGATTCACCTGCGCGGCCTGTCATTGAATAA

Upstream 100 bases:

>100_bases
ATTTAGACGGTATATTTTCATATTTTTGAAATGGTTTTCCATAAATAGAACATTTATAATGGTTTTAGAAATCTATTCTA
AAACGAAATGGGAATCGAAA

Downstream 100 bases:

>100_bases
TTGCTATAAGCGGCGTTCTCTCGTTCAACCGAGAGGGCGCCGTGTTTTAATGGAAAAAAGACTGCCGGGATTTCCCGGCA
GTCTGACAAGTTATTCTGCA

Product: pectate lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MRKWYFILLAGVLTSVILAFVYDKTKANEEGSGDYLYVSPNGSDQNEGTKEKPFRTLAHASEKAAAGTTVMIREGTYHET
LDVKHSGTDGKPITFRNYENENVVISGESVANAEYETPLIRIHDKHDIAISGLTIQDLSVSSEEATAIGIYVSGSSSHIA
IKDNHIRGIKTTADEGNAHGIAVYGTGSMKDIRIEDNTVEKLTLGASEAVVLNGNIDGFTVAGNVVRNNNNIGIDLIGYE
GTADKNDYVRNGVVENNTVYQNSTYGNPAYGDEYSAGGIYVDGGHDIEIKNNTVYDNDIGIEATSEHKGKYANAIQITDN
KVYNNAYTGISIGGYDKKRGGTSNSLIARNIMYRNDTKGLYGGQLLLQYDTKNNTIEKNILTAGDSRLFIGNDFTENEGN
TVNHNVYHKEADQDGIWMWKKKEYDSFSSYRKATKNDQQSIYADPMFRDEASYDFSLDPDSPARPVIE

Sequences:

>Translated_468_residues
MRKWYFILLAGVLTSVILAFVYDKTKANEEGSGDYLYVSPNGSDQNEGTKEKPFRTLAHASEKAAAGTTVMIREGTYHET
LDVKHSGTDGKPITFRNYENENVVISGESVANAEYETPLIRIHDKHDIAISGLTIQDLSVSSEEATAIGIYVSGSSSHIA
IKDNHIRGIKTTADEGNAHGIAVYGTGSMKDIRIEDNTVEKLTLGASEAVVLNGNIDGFTVAGNVVRNNNNIGIDLIGYE
GTADKNDYVRNGVVENNTVYQNSTYGNPAYGDEYSAGGIYVDGGHDIEIKNNTVYDNDIGIEATSEHKGKYANAIQITDN
KVYNNAYTGISIGGYDKKRGGTSNSLIARNIMYRNDTKGLYGGQLLLQYDTKNNTIEKNILTAGDSRLFIGNDFTENEGN
TVNHNVYHKEADQDGIWMWKKKEYDSFSSYRKATKNDQQSIYADPMFRDEASYDFSLDPDSPARPVIE
>Mature_468_residues
MRKWYFILLAGVLTSVILAFVYDKTKANEEGSGDYLYVSPNGSDQNEGTKEKPFRTLAHASEKAAAGTTVMIREGTYHET
LDVKHSGTDGKPITFRNYENENVVISGESVANAEYETPLIRIHDKHDIAISGLTIQDLSVSSEEATAIGIYVSGSSSHIA
IKDNHIRGIKTTADEGNAHGIAVYGTGSMKDIRIEDNTVEKLTLGASEAVVLNGNIDGFTVAGNVVRNNNNIGIDLIGYE
GTADKNDYVRNGVVENNTVYQNSTYGNPAYGDEYSAGGIYVDGGHDIEIKNNTVYDNDIGIEATSEHKGKYANAIQITDN
KVYNNAYTGISIGGYDKKRGGTSNSLIARNIMYRNDTKGLYGGQLLLQYDTKNNTIEKNILTAGDSRLFIGNDFTENEGN
TVNHNVYHKEADQDGIWMWKKKEYDSFSSYRKATKNDQQSIYADPMFRDEASYDFSLDPDSPARPVIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 8 PbH1 repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWOF_BACSU (P94576)

Other databases:

- EMBL:   Z82987
- EMBL:   AL009126
- PIR:   A70065
- RefSeq:   NP_391527.1
- ProteinModelPortal:   P94576
- SMR:   P94576
- EnsemblBacteria:   EBBACT00000001317
- GeneID:   936925
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU36460
- NMPDR:   fig|224308.1.peg.3653
- GenoList:   BSU36460
- GeneTree:   EBGT00050000002381
- HOGENOM:   HBG293915
- OMA:   HGIAVYG
- ProtClustDB:   CLSK888024
- BioCyc:   BSUB:BSU36460-MONOMER
- InterPro:   IPR006633
- InterPro:   IPR011459
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050
- Gene3D:   G3DSA:2.160.20.10
- SMART:   SM00722
- SMART:   SM00710

Pfam domain/function: PF07602 DUF1565; SSF51126 Pectin_lyas_like

EC number: NA

Molecular weight: Translated: 51452; Mature: 51452

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKWYFILLAGVLTSVILAFVYDKTKANEEGSGDYLYVSPNGSDQNEGTKEKPFRTLAHA
CCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHC
SEKAAAGTTVMIREGTYHETLDVKHSGTDGKPITFRNYENENVVISGESVANAEYETPLI
CCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCEE
RIHDKHDIAISGLTIQDLSVSSEEATAIGIYVSGSSSHIAIKDNHIRGIKTTADEGNAHG
EEECCCCEEEECEEEEECCCCCCCCEEEEEEEECCCCEEEEECCCEEEEEEECCCCCCCE
IAVYGTGSMKDIRIEDNTVEKLTLGASEAVVLNGNIDGFTVAGNVVRNNNNIGIDLIGYE
EEEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEECC
GTADKNDYVRNGVVENNTVYQNSTYGNPAYGDEYSAGGIYVDGGHDIEIKNNTVYDNDIG
CCCCCCCHHHCCEECCCEEEECCCCCCCCCCCCCCCCCEEEECCEEEEECCCEEECCCCC
IEATSEHKGKYANAIQITDNKVYNNAYTGISIGGYDKKRGGTSNSLIARNIMYRNDTKGL
CEECCCCCCCEEEEEEEECCEEECCCCCCEEECCCCCCCCCCCCCEEEEEEEEECCCCCC
YGGQLLLQYDTKNNTIEKNILTAGDSRLFIGNDFTENEGNTVNHNVYHKEADQDGIWMWK
CCCEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCCCCCEEECEEEECCCCCCCEEEEE
KKEYDSFSSYRKATKNDQQSIYADPMFRDEASYDFSLDPDSPARPVIE
CCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MRKWYFILLAGVLTSVILAFVYDKTKANEEGSGDYLYVSPNGSDQNEGTKEKPFRTLAHA
CCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHC
SEKAAAGTTVMIREGTYHETLDVKHSGTDGKPITFRNYENENVVISGESVANAEYETPLI
CCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCEE
RIHDKHDIAISGLTIQDLSVSSEEATAIGIYVSGSSSHIAIKDNHIRGIKTTADEGNAHG
EEECCCCEEEECEEEEECCCCCCCCEEEEEEEECCCCEEEEECCCEEEEEEECCCCCCCE
IAVYGTGSMKDIRIEDNTVEKLTLGASEAVVLNGNIDGFTVAGNVVRNNNNIGIDLIGYE
EEEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEECC
GTADKNDYVRNGVVENNTVYQNSTYGNPAYGDEYSAGGIYVDGGHDIEIKNNTVYDNDIG
CCCCCCCHHHCCEECCCEEEECCCCCCCCCCCCCCCCCEEEECCEEEEECCCEEECCCCC
IEATSEHKGKYANAIQITDNKVYNNAYTGISIGGYDKKRGGTSNSLIARNIMYRNDTKGL
CEECCCCCCCEEEEEEEECCEEECCCCCCEEECCCCCCCCCCCCCEEEEEEEEECCCCCC
YGGQLLLQYDTKNNTIEKNILTAGDSRLFIGNDFTENEGNTVNHNVYHKEADQDGIWMWK
CCCEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCCCCCEEECEEEECCCCCCCEEEEE
KKEYDSFSSYRKATKNDQQSIYADPMFRDEASYDFSLDPDSPARPVIE
CCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377