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The map label for this gene is spoIIID

Identifier: 16080695

GI number: 16080695

Start: 3748421

End: 3748702

Strand: Reverse

Name: spoIIID

Synonym: BSU36420

Alternate gene names: 16080695

Gene position: 3748702-3748421 (Counterclockwise)

Preceding gene: 16080696

Following gene: 50812298

Centisome position: 88.92

GC content: 40.43

Gene sequence:

>282_bases
GTGCACGATTACATCAAAGAGCGAACAATCAAGATAGGGAAGTACATCGTGGAGACAAAGAAAACCGTTCGTGTCATTGC
GAAGGAATTTGGTGTTTCCAAAAGTACAGTACACAAGGATTTAACAGAGCGTCTGCCTGAAATTAACCCCGACTTGGCAA
ACGAAGTGAAAGAAATACTCGATTATCATAAATCCATCAGGCATTTAAGAGGAGGAGAAGCGACAAAGCTCAAATATAAA
AAAGATGAAATTCTCGAAGGAGAGCCTGTTCAGCAATCGTAA

Upstream 100 bases:

>100_bases
TTAAAACCATACAACGAAGAAGCGGCATAATGAACGACTCTTTACAGAATACGGATCTCATTTCACACTTCTCACATCCA
TTTTAGGGAGGTCGAGTGGT

Downstream 100 bases:

>100_bases
TCACCTGGCATTGCCTTCTTGAAATCGTTCATAAAACATCCGCAAAAATTTGTAAAGAACTTATTGTGCTTCCAACTTTT
TTTCTATATTTTATGATAAT

Product: transcriptional regulator

Products: NA

Alternate protein names: 14 kDa transcription factor

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYK
KDEILEGEPVQQS

Sequences:

>Translated_93_residues
MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYK
KDEILEGEPVQQS
>Mature_93_residues
MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYK
KDEILEGEPVQQS

Specific function: This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SP3D_BACSU (P15281)

Other databases:

- EMBL:   X15520
- EMBL:   X52076
- EMBL:   Z82987
- EMBL:   AL009126
- PIR:   A33472
- RefSeq:   NP_391523.1
- EnsemblBacteria:   EBBACT00000003687
- GeneID:   936917
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU36420
- NMPDR:   fig|224308.1.peg.3649
- GenoList:   BSU36420
- GeneTree:   EBGT00050000002140
- HOGENOM:   HBG535260
- OMA:   KSERHIR
- ProtClustDB:   CLSK2518283
- BioCyc:   BSUB:BSU36420-MONOMER
- GO:   GO:0005622
- InterPro:   IPR012287
- InterPro:   IPR014208
- InterPro:   IPR018356
- Gene3D:   G3DSA:1.10.10.60
- TIGRFAMs:   TIGR02844

Pfam domain/function: PF12116 SpoIIID

EC number: NA

Molecular weight: Translated: 10803; Mature: 10803

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00894 HTH_DEOR_1; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
DYHKSIRHLRGGEATKLKYKKDEILEGEPVQQS
HHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCC
>Mature Secondary Structure
MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
DYHKSIRHLRGGEATKLKYKKDEILEGEPVQQS
HHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2514119; 2112673; 9353933; 9384377; 2492118