Click here to switch to the map view.

The map label for this gene is rbsC

Identifier: 16080648

GI number: 16080648

Start: 3705165

End: 3706133

Strand: Direct

Name: rbsC

Synonym: BSU35950

Alternate gene names: 16080648

Gene position: 3705165-3706133 (Clockwise)

Preceding gene: 16080647

Following gene: 16080649

Centisome position: 87.89

GC content: 47.88

Gene sequence:

>969_bases
ATGAAAACGGAACAACTGCAAACAGAACAAAAACGGATTCACTTCGACGGAGTCATGCAAAAACTCGGCCCGTTTCTTGG
TTTATTTATTCTCGTTATCATTGTATCTATTTTAAATCCCAGCTTTCTTGAACCGCTGAATATTTTAAACCTGCTTCGCC
AGGTCGCCATTAACGGATTAATCGCGTTCGGGATGACCTTTGTTATTTTGACAGGCGGCATTGATCTTTCTGTTGGCGCT
ATTCTTGCCCTGTCCAGTGCTTTAGTTGCGGGGATGATTGTGTCCGGTGTCGATCCGGTTCTCGCGATCATCCTTGGCTG
TATCATTGGTGCCGTACTAGGCATGATCAACGGATTATTGATTACTAAAGGAAAAATGGCGCCCTTTATCGCCACGCTTG
CGACCATGACTGTGTTTCGCGGACTGACGCTAGTGTATACAGATGGAAATCCGATTACCGGACTTGGCACAAACTACGGT
TTTCAGATGTTCGGACGCGGTTACTTTTTAGGCATTCCTGTACCGGCAATTACGATGGTTCTTGCCTTTGTCATCCTTTG
GGTGCTTCTTCATAAAACACCATTCGGACGCCGAACGTACGCTATCGGCGGCAACGAAAAAGCCGCGCTCATTTCAGGCA
TCAAAGTGACGCGCGTGAAAGTGATGATCTATTCTTTAGCCGGGCTTTTATCCGCTCTTGCAGGTGCCATATTGACTTCC
CGCCTGCATTCGGCCCAGCCGACTGCGGGAGAATCGTACGAACTTGATGCTATCGCGGCAGTCGTCTTAGGAGGGACAAG
TCTTTCCGGCGGCCGAGGACGCATTGTCGGCACGTTAATCGGGGTGCTGATCATCGGCACACTTAATAACGGACTTAATC
TGCTTGGCGTCTCATCATTTTATCAGCTGGTTGTCAAAGGGATTGTTATCTTAATTGCGGTATTGTTAGACCGCAAGAAG
TCAGCTTAG

Upstream 100 bases:

>100_bases
CGGATTATCGTTGTCCATGAAGGCAGAATCAGCGGCGAAATCCATGCGCGAGAAGCAACACAAGAACGAATTATGACACT
TGCCACGGGAGGGCGGTAAT

Downstream 100 bases:

>100_bases
GAGGGTTTTACATGAAAAAGGCTGTATCCGTCATTTTAACGTTATCATTATTTTTGTTAACCGCCTGTTCGCTTGAGCCT
CCCCAATGGGCAAAGCCATC

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKTEQLQTEQKRIHFDGVMQKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGA
ILALSSALVAGMIVSGVDPVLAIILGCIIGAVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNYG
FQMFGRGYFLGIPVPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTS
RLHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIVGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDRKK
SA

Sequences:

>Translated_322_residues
MKTEQLQTEQKRIHFDGVMQKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGA
ILALSSALVAGMIVSGVDPVLAIILGCIIGAVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNYG
FQMFGRGYFLGIPVPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTS
RLHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIVGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDRKK
SA
>Mature_322_residues
MKTEQLQTEQKRIHFDGVMQKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGA
ILALSSALVAGMIVSGVDPVLAIILGCIIGAVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNYG
FQMFGRGYFLGIPVPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTS
RLHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIVGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDRKK
SA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily

Homologues:

Organism=Escherichia coli, GI1790191, Length=318, Percent_Identity=51.5723270440252, Blast_Score=294, Evalue=4e-81,
Organism=Escherichia coli, GI1790524, Length=319, Percent_Identity=44.2006269592476, Blast_Score=225, Evalue=3e-60,
Organism=Escherichia coli, GI145693152, Length=311, Percent_Identity=38.5852090032154, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1788896, Length=288, Percent_Identity=41.3194444444444, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1789992, Length=348, Percent_Identity=36.4942528735632, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI87082395, Length=302, Percent_Identity=37.0860927152318, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1788471, Length=332, Percent_Identity=38.2530120481928, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787794, Length=299, Percent_Identity=37.123745819398, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI145693214, Length=257, Percent_Identity=40.8560311284047, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787793, Length=259, Percent_Identity=32.8185328185328, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSC_BACSU (P36948)

Other databases:

- EMBL:   Z25798
- EMBL:   Z92953
- EMBL:   AL009126
- PIR:   B69690
- RefSeq:   NP_391476.1
- ProteinModelPortal:   P36948
- EnsemblBacteria:   EBBACT00000000611
- GeneID:   936841
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35950
- NMPDR:   fig|224308.1.peg.3602
- GenoList:   BSU35950
- GeneTree:   EBGT00050000001196
- HOGENOM:   HBG663180
- OMA:   TTFGRHT
- PhylomeDB:   P36948
- ProtClustDB:   CLSK887991
- BioCyc:   BSUB:BSU35950-MONOMER
- InterPro:   IPR001851

Pfam domain/function: PF02653 BPD_transp_2

EC number: NA

Molecular weight: Translated: 33788; Mature: 33788

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11325d2c)-; HASH(0x11ce2dd4)-; HASH(0x12c846f8)-; HASH(0x12d84e44)-; HASH(0x1209ce20)-; HASH(0x1220ea94)-; HASH(0x12bd1ec0)-; HASH(0x12e52b94)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEQLQTEQKRIHFDGVMQKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHH
IAFGMTFVILTGGIDLSVGAILALSSALVAGMIVSGVDPVLAIILGCIIGAVLGMINGLL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEE
ITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNYGFQMFGRGYFLGIPVPAITMV
EECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHCCCEEEECCHHHHHHH
LAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTS
HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIVGTLIGVLIIGTLNNGLNLLGVSSF
HHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
YQLVVKGIVILIAVLLDRKKSA
HHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MKTEQLQTEQKRIHFDGVMQKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHH
IAFGMTFVILTGGIDLSVGAILALSSALVAGMIVSGVDPVLAIILGCIIGAVLGMINGLL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEE
ITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNYGFQMFGRGYFLGIPVPAITMV
EECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHCCCEEEECCHHHHHHH
LAFVILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTS
HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIVGTLIGVLIIGTLNNGLNLLGVSSF
HHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
YQLVVKGIVILIAVLLDRKKSA
HHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377