Click here to switch to the map view.

The map label for this gene is yvyD

Identifier: 16080584

GI number: 16080584

Start: 3631003

End: 3631572

Strand: Reverse

Name: yvyD

Synonym: BSU35310

Alternate gene names: 16080584

Gene position: 3631572-3631003 (Counterclockwise)

Preceding gene: 255767772

Following gene: 16080583

Centisome position: 86.15

GC content: 42.81

Gene sequence:

>570_bases
ATGAACTATAACATCAGAGGAGAAAATATTGAAGTGACACCCGCGTTAAAGGATCATGTCGAGAGGAAGATCGGCAAGCT
GGAGCGCTATTTTGACCATAGCGTGGATGCTGATGTGAACGTCAACTTGAAGTTTTACAATGACAAGGAGTCTAAGGTTG
AGGTTACGATTCCGATGACAGATCTGGCGCTTCGGTCCGAGGTGCATAACGAGGATATGTACAACGCAATTGATCTCGCA
ACAAACAAACTGGAACGTCAAATCCGTAAGCATAAAACGAAAGTAAACCGTAAATTCCGTGAGCAGGGCTCTCCAAAATA
TTTATTGGCAAACGGTCTTGGCTCTGATACAGATATTGCGGTTCAGGATGACATAGAAGAGGAGGAGAGCTTGGACATCG
TCCGTCAGAAACGCTTTAATTTAAAGCCGATGGATAGTGAAGAAGCGATCTTGCAAATGAATATGCTCGGCCATAATTTC
TTTGTTTTCACAAATGCGGAAACAAACCTTACAAATGTCGTGTACCGCAGAAATGACGGGAAATATGGCTTAATTGAACC
GACTGAATAA

Upstream 100 bases:

>100_bases
AGTTCACTGAATTTTCACAAAAGATTTATGTTTCAGCAGGAATTGTAAAGGGTAAAAGAGAAATAGATACATATCCTTAA
TAAAAGGGAGGCGTTCTTTG

Downstream 100 bases:

>100_bases
TGAAGAGAAGCCTTCCGTGATGTCCGCGGAAGGTTTTTGTTTTTCTTATTTGCAAATTCTTTGGAAATAACAAAAGGTAT
GATATGATAATGAGAGGTAT

Product: ribosome-associated sigma 54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MNYNIRGENIEVTPALKDHVERKIGKLERYFDHSVDADVNVNLKFYNDKESKVEVTIPMTDLALRSEVHNEDMYNAIDLA
TNKLERQIRKHKTKVNRKFREQGSPKYLLANGLGSDTDIAVQDDIEEEESLDIVRQKRFNLKPMDSEEAILQMNMLGHNF
FVFTNAETNLTNVVYRRNDGKYGLIEPTE

Sequences:

>Translated_189_residues
MNYNIRGENIEVTPALKDHVERKIGKLERYFDHSVDADVNVNLKFYNDKESKVEVTIPMTDLALRSEVHNEDMYNAIDLA
TNKLERQIRKHKTKVNRKFREQGSPKYLLANGLGSDTDIAVQDDIEEEESLDIVRQKRFNLKPMDSEEAILQMNMLGHNF
FVFTNAETNLTNVVYRRNDGKYGLIEPTE
>Mature_189_residues
MNYNIRGENIEVTPALKDHVERKIGKLERYFDHSVDADVNVNLKFYNDKESKVEVTIPMTDLALRSEVHNEDMYNAIDLA
TNKLERQIRKHKTKVNRKFREQGSPKYLLANGLGSDTDIAVQDDIEEEESLDIVRQKRFNLKPMDSEEAILQMNMLGHNF
FVFTNAETNLTNVVYRRNDGKYGLIEPTE

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVYD_BACSU (P28368)

Other databases:

- EMBL:   Z31376
- EMBL:   U56901
- EMBL:   AL009126
- EMBL:   D10279
- PIR:   I40400
- RefSeq:   NP_391411.1
- ProteinModelPortal:   P28368
- EnsemblBacteria:   EBBACT00000000499
- GeneID:   936715
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35310
- NMPDR:   fig|224308.1.peg.3537
- GenoList:   BSU35310
- GeneTree:   EBGT00050000002413
- HOGENOM:   HBG675832
- OMA:   NVVYKRK
- PhylomeDB:   P28368
- ProtClustDB:   CLSK887953
- BioCyc:   BSUB:BSU35310-MONOMER
- GO:   GO:0005488
- InterPro:   IPR003489
- Gene3D:   G3DSA:3.30.160.100
- TIGRFAMs:   TIGR00741

Pfam domain/function: PF02482 Ribosomal_S30AE; SSF69754 Ribosomal_S30Ae/sigma54_mod

EC number: NA

Molecular weight: Translated: 21980; Mature: 21980

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYNIRGENIEVTPALKDHVERKIGKLERYFDHSVDADVNVNLKFYNDKESKVEVTIPMT
CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEHH
DLALRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFREQGSPKYLLANGLGSDTDIA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEE
VQDDIEEEESLDIVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNAETNLTNVVYRRNDG
ECCCCCCHHHHHHHHHHHCCCCCCCCHHHHEEEEECCCEEEEEECCCCCCEEEEEEECCC
KYGLIEPTE
CEECCCCCC
>Mature Secondary Structure
MNYNIRGENIEVTPALKDHVERKIGKLERYFDHSVDADVNVNLKFYNDKESKVEVTIPMT
CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEHH
DLALRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFREQGSPKYLLANGLGSDTDIA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEE
VQDDIEEEESLDIVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNAETNLTNVVYRRNDG
ECCCCCCHHHHHHHHHHHCCCCCCCCHHHHEEEEECCCEEEEEECCCCCCEEEEEEECCC
KYGLIEPTE
CEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557