Click here to switch to the map view.

The map label for this gene is yvcP

Identifier: 16080525

GI number: 16080525

Start: 3567422

End: 3568135

Strand: Reverse

Name: yvcP

Synonym: BSU34720

Alternate gene names: 16080525

Gene position: 3568135-3567422 (Counterclockwise)

Preceding gene: 16080526

Following gene: 16080524

Centisome position: 84.64

GC content: 43.7

Gene sequence:

>714_bases
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAGAATGAGGCCGAATGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTCCAGCTTCTCTCGATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAATCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGTTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Upstream 100 bases:

>100_bases
TAACAAAAAGAAAAAGACCGATTTACTATTCCGCACATGCTATAATAATTTTGGAATCTTCTAGAAAAATCATCGTGATG
TACATATAAGGGGGATCAAC

Downstream 100 bases:

>100_bases
AGACTTATCTCATCGACCGCTTAGCCATTATTCTATTTTCATTATTAGGGATAGGGTCCGCCATGCTGATTGCGTATTTA
AGCATTGTAGAGAGCGGCGC

Product: two-component response regulator YvcQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Sequences:

>Translated_237_residues
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC
>Mature_237_residues
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Specific function: Member of the two-component regulatory system yvcQ/yvcP

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain

Homologues:

Organism=Escherichia coli, GI1786599, Length=228, Percent_Identity=33.3333333333333, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=32.7510917030568, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787375, Length=228, Percent_Identity=30.7017543859649, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1790860, Length=228, Percent_Identity=30.2631578947368, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1789809, Length=228, Percent_Identity=30.2631578947368, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1786911, Length=232, Percent_Identity=31.4655172413793, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI87082012, Length=233, Percent_Identity=30.0429184549356, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1786784, Length=229, Percent_Identity=30.1310043668122, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789402, Length=226, Percent_Identity=31.858407079646, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693140, Length=238, Percent_Identity=31.9327731092437, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787229, Length=225, Percent_Identity=28.4444444444444, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=30.0429184549356, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI2367329, Length=230, Percent_Identity=29.1304347826087, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790552, Length=234, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788550, Length=105, Percent_Identity=31.4285714285714, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVCP_BACSU (O06978)

Other databases:

- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   D70032
- RefSeq:   NP_391352.1
- HSSP:   P21866
- ProteinModelPortal:   O06978
- SMR:   O06978
- EnsemblBacteria:   EBBACT00000001104
- GeneID:   936531
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34720
- NMPDR:   fig|224308.1.peg.3478
- GenoList:   BSU34720
- GeneTree:   EBGT00050000000049
- HOGENOM:   HBG753323
- OMA:   RTISNAP
- ProtClustDB:   CLSK247690
- BioCyc:   BSUB:BSU34720-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00448
- SMART:   SM00862

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C; SSF46894 Bipartite_resp_reg_C-effector; SSF52172 CheY_like

EC number: NA

Molecular weight: Translated: 27515; Mature: 27515

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDG
CEEEEEEECCHHHHHHHHHHHHHHCCEEEEHHHHCCCEEEHHHCCCCEEEEEECCCHHHH
FYWCRQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTY
HHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
GEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQKEFQLLSIFVREHKKIVSRDE
HCCCCCCCCCCCEEEECCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
LLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC
HHHHHHCCCCCCCCCEEEEEHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDG
CEEEEEEECCHHHHHHHHHHHHHHCCEEEEHHHHCCCEEEHHHCCCCEEEEEECCCHHHH
FYWCRQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTY
HHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
GEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQKEFQLLSIFVREHKKIVSRDE
HCCCCCCCCCCCEEEECCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
LLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC
HHHHHHCCCCCCCCCEEEEEHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377