Click here to switch to the map view.

The map label for this gene is racX

Identifier: 16080496

GI number: 16080496

Start: 3533419

End: 3534102

Strand: Reverse

Name: racX

Synonym: BSU34430

Alternate gene names: 16080496

Gene position: 3534102-3533419 (Counterclockwise)

Preceding gene: 16080497

Following gene: 16080495

Centisome position: 83.83

GC content: 44.59

Gene sequence:

>684_bases
ATGATCGGAATATTAGCCGGAATGGGGCCGAAATCGACCTCGCCGTTTATTGATAAGGTGATTGATTACTGTCAGAAGCT
GTATGGGGCTTCAAACGATATTGACTATCCGCACATGATGATCTATTCATGCCCGACGCCCTTCTATGCAGATCGTCCAA
TTGACCATGACGAGATGAAAAAAGCGATTATCGACGGAGCGGTAAAGCTCGAGAAAACAGGCGTGGATTTCATTGCGCTG
CCTTGTAATACGGCGCATGTCTACTATGAAGAGATTCAGCAGGCATTGTCAGTTCCTATGTTGCATATTGTTGAGGAAAC
GATAAAAGAGATTCCGCATCCCGCAAAAAAAGCGGTGGTTTTAGGAACAGAGCCAACCATCCAATCCGCCATCTACCAAA
AAGTTCTGAAGGGAAATGGACAAGAAGTTATTCACAAGGACCATTGGCAGCAGGCTGTGAACCAGCTTATCGCCGCAATC
AAACAGCCAAATCATATGCAGCATACACAAGCATTGTGGCAGACGCTATATGAAGAAATCAGTCAGCATGCAGACATCAT
CATTTCAGCCTGCACGGATTTAAATGCGGTGTTAGATCATATTCAAAGTGAGATTCCGATTATAGATTCCTCTGCCTGTC
TTGCCAAAAGCACTGTCAGCACATATCTTGCTTATCAAAGCTAG

Upstream 100 bases:

>100_bases
CGAGTTTACATTAGGTGAGGATGCTGCGAAAAGCTTTATCCTCTATGAGGATGGCTCAGAGGAAGAAGCGGTCCGTACGA
AGTAGAAAGGAATGAATTTG

Downstream 100 bases:

>100_bases
CTTCAGACAAGGACTGTCTTCAAACAGTCCTTGTTTTTTTATGTTCCTATTGTTTGACAGTTAACTGCAATGGTGTTAAA
GTGAACATGTAAATAGTTAC

Product: amino acid racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MIGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTPFYADRPIDHDEMKKAIIDGAVKLEKTGVDFIAL
PCNTAHVYYEEIQQALSVPMLHIVEETIKEIPHPAKKAVVLGTEPTIQSAIYQKVLKGNGQEVIHKDHWQQAVNQLIAAI
KQPNHMQHTQALWQTLYEEISQHADIIISACTDLNAVLDHIQSEIPIIDSSACLAKSTVSTYLAYQS

Sequences:

>Translated_227_residues
MIGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTPFYADRPIDHDEMKKAIIDGAVKLEKTGVDFIAL
PCNTAHVYYEEIQQALSVPMLHIVEETIKEIPHPAKKAVVLGTEPTIQSAIYQKVLKGNGQEVIHKDHWQQAVNQLIAAI
KQPNHMQHTQALWQTLYEEISQHADIIISACTDLNAVLDHIQSEIPIIDSSACLAKSTVSTYLAYQS
>Mature_227_residues
MIGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTPFYADRPIDHDEMKKAIIDGAVKLEKTGVDFIAL
PCNTAHVYYEEIQQALSVPMLHIVEETIKEIPHPAKKAVVLGTEPTIQSAIYQKVLKGNGQEVIHKDHWQQAVNQLIAAI
KQPNHMQHTQALWQTLYEEISQHADIIISACTDLNAVLDHIQSEIPIIDSSACLAKSTVSTYLAYQS

Specific function: Probable aspartate or glutamate racemase involved in peptidoglycan modification during cortex synthesis

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RACX_BACSU (P32960)

Other databases:

- EMBL:   L10629
- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   B36908
- RefSeq:   NP_391323.1
- ProteinModelPortal:   P32960
- SMR:   P32960
- EnsemblBacteria:   EBBACT00000001278
- GeneID:   938575
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34430
- NMPDR:   fig|224308.1.peg.3449
- GenoList:   BSU34430
- GeneTree:   EBGT00050000001672
- HOGENOM:   HBG617053
- OMA:   ITYIKSG
- ProtClustDB:   CLSK887920
- BioCyc:   BSUB:BSU34430-MONOMER
- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380
- Gene3D:   G3DSA:3.40.50.1860
- TIGRFAMs:   TIGR00035

Pfam domain/function: PF01177 Asp_Glu_race; SSF53681 Asp/Glu_race

EC number: NA

Molecular weight: Translated: 25286; Mature: 25286

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS00923 ASP_GLU_RACEMASE_1; PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTPFYADRPIDHDEMK
CCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHH
KAIIDGAVKLEKTGVDFIALPCNTAHVYYEEIQQALSVPMLHIVEETIKEIPHPAKKAVV
HHHHHHHHHEEECCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEE
LGTEPTIQSAIYQKVLKGNGQEVIHKDHWQQAVNQLIAAIKQPNHMQHTQALWQTLYEEI
ECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SQHADIIISACTDLNAVLDHIQSEIPIIDSSACLAKSTVSTYLAYQS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTPFYADRPIDHDEMK
CCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHH
KAIIDGAVKLEKTGVDFIALPCNTAHVYYEEIQQALSVPMLHIVEETIKEIPHPAKKAVV
HHHHHHHHHEEECCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEE
LGTEPTIQSAIYQKVLKGNGQEVIHKDHWQQAVNQLIAAIKQPNHMQHTQALWQTLYEEI
ECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SQHADIIISACTDLNAVLDHIQSEIPIIDSSACLAKSTVSTYLAYQS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8491712; 9384377