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The map label for this gene is tpiA

Identifier: 16080445

GI number: 16080445

Start: 3479405

End: 3480166

Strand: Reverse

Name: tpiA

Synonym: BSU33920

Alternate gene names: 16080445

Gene position: 3480166-3479405 (Counterclockwise)

Preceding gene: 16080446

Following gene: 16080444

Centisome position: 82.55

GC content: 47.77

Gene sequence:

>762_bases
ATGAGAAAACCAATTATCGCCGGTAACTGGAAAATGAACAAAACACTCGGCGAAGCTGTCAGCTTCGTTGAAGAAGTGAA
ATCTTCCATTCCAGCAGCAGACAAAGCTGAAGCTGTTGTTTGCGCGCCAGCGCTTTTCTTAGAAAAGCTTGCTTCTGCTG
TGAAAGGCACTGACCTAAAAGTCGGCGCTCAAAACATGCACTTCGAAGAAAGCGGCGCGTTCACAGGCGAAATCAGCCCG
GTTGCTCTGAAAGACCTTGGCGTTGACTACTGCGTCATCGGCCACTCTGAGCGCCGTGAAATGTTCGCTGAAACTGATGA
AACAGTTAACAAAAAAGCACACGCAGCTTTCAAACACGGCATTGTGCCGATCATCTGTGTAGGTGAAACGCTTGAAGAGC
GTGAAGCCGGCAAAACAAATGATCTTGTTGCTGACCAAGTGAAAAAAGGCCTTGCTGGTCTTTCTGAAGAACAAGTTGCT
GCTTCTGTTATTGCGTATGAGCCAATCTGGGCAATCGGAACAGGCAAATCTTCTACAGCGAAAGATGCGAATGACGTGTG
TGCGCATATCCGTAAAACCGTCGCTGAAAGCTTCAGCCAAGAAGCTGCAGACAAGCTTCGCATCCAATATGGCGGAAGCG
TAAAGCCTGCAAACATTAAAGAATATATGGCAGAGTCCGATATTGACGGTGCTTTGGTCGGCGGCGCGAGCCTTGAGCCA
CAGTCATTCGTTCAATTATTGGAGGAAGGTCAATATGAGTAA

Upstream 100 bases:

>100_bases
CGGCGGCGCATCCCTTGAGTTTATGGAAGGCAAAGAGCTTCCAGGGGTAGCTGCACTGAACGATAAATAATCTCAAAACT
GCTATAAGGAAGTGGAACAG

Downstream 100 bases:

>100_bases
AAAACCAGCTGCACTCATCATTCTTGATGGGTTCGGATTACGTAACGAAACAGTAGGGAACGCAGTCGCTTTAGCGAAAA
AACCGAATTTTGACCGCTAT

Product: triosephosphate isomerase

Products: NA

Alternate protein names: TIM; Triose-phosphate isomerase [H]

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MRKPIIAGNWKMNKTLGEAVSFVEEVKSSIPAADKAEAVVCAPALFLEKLASAVKGTDLKVGAQNMHFEESGAFTGEISP
VALKDLGVDYCVIGHSERREMFAETDETVNKKAHAAFKHGIVPIICVGETLEEREAGKTNDLVADQVKKGLAGLSEEQVA
ASVIAYEPIWAIGTGKSSTAKDANDVCAHIRKTVAESFSQEAADKLRIQYGGSVKPANIKEYMAESDIDGALVGGASLEP
QSFVQLLEEGQYE

Sequences:

>Translated_253_residues
MRKPIIAGNWKMNKTLGEAVSFVEEVKSSIPAADKAEAVVCAPALFLEKLASAVKGTDLKVGAQNMHFEESGAFTGEISP
VALKDLGVDYCVIGHSERREMFAETDETVNKKAHAAFKHGIVPIICVGETLEEREAGKTNDLVADQVKKGLAGLSEEQVA
ASVIAYEPIWAIGTGKSSTAKDANDVCAHIRKTVAESFSQEAADKLRIQYGGSVKPANIKEYMAESDIDGALVGGASLEP
QSFVQLLEEGQYE
>Mature_253_residues
MRKPIIAGNWKMNKTLGEAVSFVEEVKSSIPAADKAEAVVCAPALFLEKLASAVKGTDLKVGAQNMHFEESGAFTGEISP
VALKDLGVDYCVIGHSERREMFAETDETVNKKAHAAFKHGIVPIICVGETLEEREAGKTNDLVADQVKKGLAGLSEEQVA
ASVIAYEPIWAIGTGKSSTAKDANDVCAHIRKTVAESFSQEAADKLRIQYGGSVKPANIKEYMAESDIDGALVGGASLEP
QSFVQLLEEGQYE

Specific function: Plays an important role in several metabolic pathways. [C]

COG id: COG0149

COG function: function code G; Triosephosphate isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the triosephosphate isomerase family [H]

Homologues:

Organism=Homo sapiens, GI4507645, Length=253, Percent_Identity=41.897233201581, Blast_Score=181, Evalue=6e-46,
Organism=Homo sapiens, GI226529917, Length=253, Percent_Identity=41.897233201581, Blast_Score=181, Evalue=7e-46,
Organism=Escherichia coli, GI1790353, Length=248, Percent_Identity=39.9193548387097, Blast_Score=192, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI17536593, Length=249, Percent_Identity=44.1767068273092, Blast_Score=182, Evalue=1e-46,
Organism=Saccharomyces cerevisiae, GI6320255, Length=247, Percent_Identity=42.914979757085, Blast_Score=192, Evalue=4e-50,
Organism=Drosophila melanogaster, GI28572008, Length=252, Percent_Identity=45.2380952380952, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI28572006, Length=252, Percent_Identity=45.2380952380952, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI28572004, Length=252, Percent_Identity=45.2380952380952, Blast_Score=201, Evalue=3e-52,

Paralogues:

None

Copy number: 1120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR022896
- InterPro:   IPR000652
- InterPro:   IPR020861 [H]

Pfam domain/function: PF00121 TIM [H]

EC number: =5.3.1.1 [H]

Molecular weight: Translated: 27030; Mature: 27030

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00171 TIM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPIIAGNWKMNKTLGEAVSFVEEVKSSIPAADKAEAVVCAPALFLEKLASAVKGTDLK
CCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEE
VGAQNMHFEESGAFTGEISPVALKDLGVDYCVIGHSERREMFAETDETVNKKAHAAFKHG
ECCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
IVPIICVGETLEEREAGKTNDLVADQVKKGLAGLSEEQVAASVIAYEPIWAIGTGKSSTA
CEEEEECCCCHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCCCC
KDANDVCAHIRKTVAESFSQEAADKLRIQYGGSVKPANIKEYMAESDIDGALVGGASLEP
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCCCCEEECCCCCCH
QSFVQLLEEGQYE
HHHHHHHHCCCCC
>Mature Secondary Structure
MRKPIIAGNWKMNKTLGEAVSFVEEVKSSIPAADKAEAVVCAPALFLEKLASAVKGTDLK
CCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEE
VGAQNMHFEESGAFTGEISPVALKDLGVDYCVIGHSERREMFAETDETVNKKAHAAFKHG
ECCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
IVPIICVGETLEEREAGKTNDLVADQVKKGLAGLSEEQVAASVIAYEPIWAIGTGKSSTA
CEEEEECCCCHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCCCC
KDANDVCAHIRKTVAESFSQEAADKLRIQYGGSVKPANIKEYMAESDIDGALVGGASLEP
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCCCCEEECCCCCCH
QSFVQLLEEGQYE
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA