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The map label for this gene is yvrC

Identifier: 16080371

GI number: 16080371

Start: 3403493

End: 3404437

Strand: Reverse

Name: yvrC

Synonym: BSU33180

Alternate gene names: 16080371

Gene position: 3404437-3403493 (Counterclockwise)

Preceding gene: 16080373

Following gene: 16080370

Centisome position: 80.76

GC content: 44.76

Gene sequence:

>945_bases
ATGAAAAAACGAGCCGGGATATGGGCTGCGCTTCTGTTGGCTGCTGTTATGCTGGCAGGCTGCGGCAATCCTGCGGATCA
GAAGGATTCAAAGGCAAAACAAAAAACAGAAGTGTTCCCTGTCACCATTGATGATGCGTCAAACCAAGATGTAACCATCA
AAAAAGAGCCAAAAAAGATTGTTTCATTAATGCCGAGCAACACAGAAATTACATACGCACTCGGCCTTGGTGACAAAGTG
GTCGGTGTCACCACAAACGATACCTATCCAAAGGAAGTCAAAAAGGTTGAGAAAGTCGGAGATATGAATGTAAACGTTGA
AAAAGTCATTTCTCTAAAACCAGATCTCGTTCTGGCCCATGAGTCTTCCATGTCAGCATCAGCGGATGCCATCAAACAGC
TGAAGGACGCGGGCATTACAGTGCTGACTGTCAATGATGCACAATCATTCTCCGAGGTGTACAAATCAATCGAAATGATC
GGAGAAGCTGGCGGGGCGGAGAAAAAAGCCGATCAGCTCGTGAAAAGCATGAAATCAGATCTAAAGGATATTCAAGAAAA
AGCGAAAACCATTTCAAAAGACGAGGAGAAAAGCGTATTTATCGAGGTTTCTCCTGATCCTGACATTTATACAACCGGAA
AAGATACGTTTATGAATGAAATGCTAAATGTCATCCATGCTAAAAACGCAGCTGCGGATCAGACAGGATGGGTGCAAATG
ACAGACGAGGCGATCGTAAAACTCAATCCTGATGCAATTGTTACAACGGACGGTGTGAAAGCGAAAGCTGTGGAAAAACG
CGATGGCTGGAGCGAAATCAATGCTGTGAAACATCATCGTGTATATGATGTGGACCCTGATCTTGTGACACGTTCCGGTC
CCCGTCTGATCGAAGGGGTCGAAGAACTTGCGGAAAGCATTTACCCGGATACGTTTAAGGAATAA

Upstream 100 bases:

>100_bases
CGAGGACAGATGATGTGTAAACAATAGGCTTTTTTGTGTTGTTTACAGCATCTTTACCGTCGTAGAGATGCTTTTTTAGT
TCGTTTAGGAGGAAAAGATT

Downstream 100 bases:

>100_bases
TCGTTATGCCGCATATATCATTGGTTTCTCATTTTTAGCCGTGAGCATCATCTTAGGAATTTCTTGCGGCAGCCTGCATA
TTCCTATTCCCGCTGTTTTT

Product: lipoprotein binding vitamin B12

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MKKRAGIWAALLLAAVMLAGCGNPADQKDSKAKQKTEVFPVTIDDASNQDVTIKKEPKKIVSLMPSNTEITYALGLGDKV
VGVTTNDTYPKEVKKVEKVGDMNVNVEKVISLKPDLVLAHESSMSASADAIKQLKDAGITVLTVNDAQSFSEVYKSIEMI
GEAGGAEKKADQLVKSMKSDLKDIQEKAKTISKDEEKSVFIEVSPDPDIYTTGKDTFMNEMLNVIHAKNAAADQTGWVQM
TDEAIVKLNPDAIVTTDGVKAKAVEKRDGWSEINAVKHHRVYDVDPDLVTRSGPRLIEGVEELAESIYPDTFKE

Sequences:

>Translated_314_residues
MKKRAGIWAALLLAAVMLAGCGNPADQKDSKAKQKTEVFPVTIDDASNQDVTIKKEPKKIVSLMPSNTEITYALGLGDKV
VGVTTNDTYPKEVKKVEKVGDMNVNVEKVISLKPDLVLAHESSMSASADAIKQLKDAGITVLTVNDAQSFSEVYKSIEMI
GEAGGAEKKADQLVKSMKSDLKDIQEKAKTISKDEEKSVFIEVSPDPDIYTTGKDTFMNEMLNVIHAKNAAADQTGWVQM
TDEAIVKLNPDAIVTTDGVKAKAVEKRDGWSEINAVKHHRVYDVDPDLVTRSGPRLIEGVEELAESIYPDTFKE
>Mature_314_residues
MKKRAGIWAALLLAAVMLAGCGNPADQKDSKAKQKTEVFPVTIDDASNQDVTIKKEPKKIVSLMPSNTEITYALGLGDKV
VGVTTNDTYPKEVKKVEKVGDMNVNVEKVISLKPDLVLAHESSMSASADAIKQLKDAGITVLTVNDAQSFSEVYKSIEMI
GEAGGAEKKADQLVKSMKSDLKDIQEKAKTISKDEEKSVFIEVSPDPDIYTTGKDTFMNEMLNVIHAKNAAADQTGWVQM
TDEAIVKLNPDAIVTTDGVKAKAVEKRDGWSEINAVKHHRVYDVDPDLVTRSGPRLIEGVEELAESIYPDTFKE

Specific function: Probably part of an ABC transporter complex

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain

Homologues:

Organism=Escherichia coli, GI1786353, Length=251, Percent_Identity=28.2868525896414, Blast_Score=101, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVRC_BACSU (O34805)

Other databases:

- EMBL:   AJ223978
- EMBL:   AL009126
- PIR:   G70046
- RefSeq:   NP_391198.1
- HSSP:   P37028
- ProteinModelPortal:   O34805
- SMR:   O34805
- EnsemblBacteria:   EBBACT00000001548
- GeneID:   935980
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33180
- NMPDR:   fig|224308.1.peg.3324
- GenoList:   BSU33180
- GeneTree:   EBGT00070000032017
- HOGENOM:   HBG708630
- OMA:   TEKDAYQ
- PhylomeDB:   O34805
- ProtClustDB:   CLSK873071
- BioCyc:   BSUB:BSU33180-MONOMER
- InterPro:   IPR002491

Pfam domain/function: PF01497 Peripla_BP_2

EC number: NA

Molecular weight: Translated: 34239; Mature: 34239

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50983 FE_B12_PBP; PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRAGIWAALLLAAVMLAGCGNPADQKDSKAKQKTEVFPVTIDDASNQDVTIKKEPKKI
CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEEECCHHHH
VSLMPSNTEITYALGLGDKVVGVTTNDTYPKEVKKVEKVGDMNVNVEKVISLKPDLVLAH
HHHCCCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHEECCCCEEEEE
ESSMSASADAIKQLKDAGITVLTVNDAQSFSEVYKSIEMIGEAGGAEKKADQLVKSMKSD
CCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LKDIQEKAKTISKDEEKSVFIEVSPDPDIYTTGKDTFMNEMLNVIHAKNAAADQTGWVQM
HHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEE
TDEAIVKLNPDAIVTTDGVKAKAVEKRDGWSEINAVKHHRVYDVDPDLVTRSGPRLIEGV
CCCEEEEECCCEEEEECCCCEEHHHCCCCHHHHHHHHHCEEEECCHHHHCCCCCHHHHHH
EELAESIYPDTFKE
HHHHHHHCCCCCCC
>Mature Secondary Structure
MKKRAGIWAALLLAAVMLAGCGNPADQKDSKAKQKTEVFPVTIDDASNQDVTIKKEPKKI
CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEEECCHHHH
VSLMPSNTEITYALGLGDKVVGVTTNDTYPKEVKKVEKVGDMNVNVEKVISLKPDLVLAH
HHHCCCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHEECCCCEEEEE
ESSMSASADAIKQLKDAGITVLTVNDAQSFSEVYKSIEMIGEAGGAEKKADQLVKSMKSD
CCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LKDIQEKAKTISKDEEKSVFIEVSPDPDIYTTGKDTFMNEMLNVIHAKNAAADQTGWVQM
HHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEE
TDEAIVKLNPDAIVTTDGVKAKAVEKRDGWSEINAVKHHRVYDVDPDLVTRSGPRLIEGV
CCCEEEEECCCEEEEECCCCEEHHHCCCCHHHHHHHHHCEEEECCHHHHCCCCCHHHHHH
EELAESIYPDTFKE
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377