Click here to switch to the map view.

The map label for this gene is yueF

Identifier: 16080231

GI number: 16080231

Start: 3262611

End: 3263720

Strand: Reverse

Name: yueF

Synonym: BSU31800

Alternate gene names: 16080231

Gene position: 3263720-3262611 (Counterclockwise)

Preceding gene: 16080233

Following gene: 16080230

Centisome position: 77.42

GC content: 43.42

Gene sequence:

>1110_bases
TTGTTGAAATCAAAAGTCCATTTTTGGACATTGCAGATTTTATTTGTTTTGCTGATTATTTTTGTAGCAACAAAAGTTTC
ATTTGTATTTCAGCCGTTTATTGTTTTTATCTCGACATTGTTTTTCCCGATGCTAATTGCGGGAATTTTGTATTTCATAT
TTAATCCGGTCGTCCGCCTGCTTGAGAAAAAAATTCCGCGGACATTATCCATTCTATTGATCTATTTACTGTTTATCGGT
TTGCTTGCCTTTATTTCAGCGTCAGTCGGACCTATCATCACCGCACAGGTGACAGGGCTGTTTAACAACCTTCCTGATTA
TATAAAACAGATTCAGGCGCTGACAAAGGATTTGTCCCATTCTCAATGGTTTACCTGGATGATGAACCAGGATTATGTAT
CGATATCAAAAATTGAACAGTCATTGACAAGTTTTCTCCAAAACCTGCCGCAAAATATCACGTCCAGTTTATCTGCGGTG
TTTGGTGTCGTGACAAACATCACGCTTGTTATTATTACTGTTCCATTTATCCTTTTTTACATGCTGAAAGACGGACACCG
CTTTCCGCATTTGGCAGTAAAAATTCTACCGGCTTCTTATCGGACAGAAGGCTTAAAGATTTTTAAAGATTTATCCGATA
CGCTTGCGGCATATTTCCAGGGGCAGCTGTTAATCTGTCTTTTTGTCGGAACAGCGTGTTTTATCGGCTATTTAATTGCC
GGACTGCCGTATGCCCTGATTCTTGGGATTGTCATGGCGATTACCAATATCATTCCCTATGTCGGGCCTTTTCTCGGTGC
CGCGCCGGCTGTCATTGTCGGTTTTATGGACTCGCCGGCCAAAGCGCTGTTTGCGATTATTGTGGTCGTCATCGTTCAGC
AGCTGGACGGAAACCTGCTGTCTCCTCTTGTGATCGGAAAGCGGCTGAATACCCATCCGCTTACGATTATTTTGCTATTA
ATCGGAGCGGGAAGCTTCGGCGGAATTCTCGGCATGATTTTAGCGGTGCCGGTTTATGCGGTAGTGAAGGCGTTCTTCCT
GAATATTGTCCGCTTGATCAAGCTGCGCCAGCGGTCACGACTCGAGGAAAACGCAAAGCCAGCTGAATAG

Upstream 100 bases:

>100_bases
TCATTATATTAAGAGTTCTGATATGAGTTCATTTTTGTTACAATGATGGGGTATAAGTTCTTTTATCTGACAGACAAAGA
AAAACTAGGAGGAACAAAGC

Downstream 100 bases:

>100_bases
GCGGGCACCATTATCGGCTCCTTGCATATGATGCTGTAAATCAATGCGGAGGTGGGGAAATGCCTGCAATTGTGGGGCCG
ATTTATATCATGTCAGTTAC

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MLKSKVHFWTLQILFVLLIIFVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRLLEKKIPRTLSILLIYLLFIG
LLAFISASVGPIITAQVTGLFNNLPDYIKQIQALTKDLSHSQWFTWMMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAV
FGVVTNITLVIITVPFILFYMLKDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIA
GLPYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLLSPLVIGKRLNTHPLTIILLL
IGAGSFGGILGMILAVPVYAVVKAFFLNIVRLIKLRQRSRLEENAKPAE

Sequences:

>Translated_369_residues
MLKSKVHFWTLQILFVLLIIFVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRLLEKKIPRTLSILLIYLLFIG
LLAFISASVGPIITAQVTGLFNNLPDYIKQIQALTKDLSHSQWFTWMMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAV
FGVVTNITLVIITVPFILFYMLKDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIA
GLPYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLLSPLVIGKRLNTHPLTIILLL
IGAGSFGGILGMILAVPVYAVVKAFFLNIVRLIKLRQRSRLEENAKPAE
>Mature_369_residues
MLKSKVHFWTLQILFVLLIIFVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRLLEKKIPRTLSILLIYLLFIG
LLAFISASVGPIITAQVTGLFNNLPDYIKQIQALTKDLSHSQWFTWMMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAV
FGVVTNITLVIITVPFILFYMLKDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIA
GLPYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLLSPLVIGKRLNTHPLTIILLL
IGAGSFGGILGMILAVPVYAVVKAFFLNIVRLIKLRQRSRLEENAKPAE

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family

Homologues:

Organism=Escherichia coli, GI1788838, Length=317, Percent_Identity=28.391167192429, Blast_Score=127, Evalue=8e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YUEF_BACSU (O32095)

Other databases:

- EMBL:   AL009126
- PIR:   G70007
- RefSeq:   NP_391058.1
- EnsemblBacteria:   EBBACT00000000661
- GeneID:   936534
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU31800
- NMPDR:   fig|224308.1.peg.3183
- GenoList:   BSU31800
- GeneTree:   EBGT00070000031825
- HOGENOM:   HBG712680
- OMA:   EDVFLKS
- PhylomeDB:   O32095
- ProtClustDB:   CLSK887814
- BioCyc:   BSUB:BSU31800-MONOMER
- InterPro:   IPR002549
- PANTHER:   PTHR21716

Pfam domain/function: PF01594 UPF0118

EC number: NA

Molecular weight: Translated: 40897; Mature: 40897

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe3401dc)-; HASH(0x111df3d4)-; HASH(0x11d81980)-; HASH(0xfbad560)-; HASH(0x10dc78a4)-; HASH(0x1204fa80)-; HASH(0x1203ee9c)-; HASH(0x1203068c)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSKVHFWTLQILFVLLIIFVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEKKIPRTLSILLIYLLFIGLLAFISASVGPIITAQVTGLFNNLPDYIKQIQALTKDLSH
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SQWFTWMMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVVTNITLVIITVPFILFY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLKDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIA
HHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GLPYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
SPLVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFFLNIVRLIKLRQRSR
HHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEENAKPAE
HHCCCCCCH
>Mature Secondary Structure
MLKSKVHFWTLQILFVLLIIFVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEKKIPRTLSILLIYLLFIGLLAFISASVGPIITAQVTGLFNNLPDYIKQIQALTKDLSH
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SQWFTWMMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVVTNITLVIITVPFILFY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLKDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIA
HHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GLPYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
SPLVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFFLNIVRLIKLRQRSR
HHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEENAKPAE
HHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377