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The map label for this gene is ytrF

Identifier: 16080093

GI number: 16080093

Start: 3113979

End: 3115289

Strand: Reverse

Name: ytrF

Synonym: BSU30410

Alternate gene names: 16080093

Gene position: 3115289-3113979 (Counterclockwise)

Preceding gene: 16080094

Following gene: 16080092

Centisome position: 73.9

GC content: 40.43

Gene sequence:

>1311_bases
TTGAGGTTTAAGGATCAGGTTCATTTTATCAGAAGAAATATGAAGAAAAACAGGCTTCGCGTCTTTATGACGATTCTGGC
GACAACAATGGCGTGTGCGTTTTTGGTTGTGTTGTCGTCCGTTGGATTTGGGATTCAAAAGACGATTACAGATATGACAA
TGAGCCAGCAGATTGTAACGAAAGTCAGCGTAATGGGCAAGGAAGGAGACAAGCCGATTAAAAAAGCTGATTTAGAGAAG
TATGATCACGTAAGGTCAGTTGTAGAAAGAACGCAAGTGTATGAACCAAACAAAGCTACTTTAGGCAATCGTACAAATGA
AAGCTCAAATCTCATTTTTACTAATATGAATGATGAATTAAAGGCCAATATGGAATTGGAAAAGGGAAGAGTCGCAAAGT
CGGAAAATGAAATCGTAGTAGGATACGACTTCGCAAAGAGATTATTAACGAAAAAAGAATCGGAAGAATATAACAAAAAA
ATCGAGGAAGCAAAAGGAAATCCAGAAGATATAAAAGAACCAAAGGGCTATACGAAAGATATTCTAAATAAAACAATTGA
ACTAAGTGTATCGAAGACAGATTCTAAAACAGGGGATGTTACAAAAACAAAAACATATGACTTTAAAATTGTCGGTATTA
CAAAAAAACCATCTCAAGACTGGATGGAGGACTCAAATATTTTTATCAGTGATCAATTCAAAAAAGATTTTTCGGAATTC
TTAGATTTCAAAGGCGGAAATGTTGAAACGAACATTGGTGTTTTTGCTGATAAGTTTGAGAATGTGGAACAGCTGACAAA
TGATCTAACAGATGACGGGTACTATGTCACATCAGTGACTACTGAACTTGAGGGAGCCAATACCTTCTTCATGGTCTTCA
AAATCGGACTGATCTTTGTCGGATGTATCGCAGTTATCATTTCAGCGATCGGCATTTTTAACACGATGACGATGGCGGTG
ACAGAGAGAACGCAAGAGATCGGCATTATGAAAGCGATTGGGGCGAGCCCGTCAATCATTCGCCGAATGTTCTTGATGGA
AAGCGCGTATATCGGAATTTTAGGCTGTGTGATTGGGATTATCATTTCTTACGGCGTGAGCTACCTTGTCAACCTGGCCG
TTCCGATGATTCTTGCGGCCACAAGCGGTGGCGATGCGGGCGATTTGAATTACACATTCTCCTACATCCCGGCGAGCCTT
GTGATCATTGCCGTTGTGATTTGCGGAGGGGTCGCAGTCATTTCCGGAATGAACCCGGCGAGAAAAGCTACCAAAACCAA
CGTGCTGACAGCGTTGAGAAGAGAATTATAA

Upstream 100 bases:

>100_bases
GGCATTACATTTGTGATCATTACTCACGATGATGAAGTCGCTTCTATCGGACATTCAAAATTTCAGCTTCATGATGGTGT
GCTAAAAGGAGGAATTACCG

Downstream 100 bases:

>100_bases
TGCGAACGAGCCGGCTGAGACAGCCGGCTTTTTCTATAGCGCATGCTGGCGTTTTGCTATACACTTGATAAAAAAGGAAA
AAGTGCGGTGAGTCGATTGT

Product: metabolite permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MRFKDQVHFIRRNMKKNRLRVFMTILATTMACAFLVVLSSVGFGIQKTITDMTMSQQIVTKVSVMGKEGDKPIKKADLEK
YDHVRSVVERTQVYEPNKATLGNRTNESSNLIFTNMNDELKANMELEKGRVAKSENEIVVGYDFAKRLLTKKESEEYNKK
IEEAKGNPEDIKEPKGYTKDILNKTIELSVSKTDSKTGDVTKTKTYDFKIVGITKKPSQDWMEDSNIFISDQFKKDFSEF
LDFKGGNVETNIGVFADKFENVEQLTNDLTDDGYYVTSVTTELEGANTFFMVFKIGLIFVGCIAVIISAIGIFNTMTMAV
TERTQEIGIMKAIGASPSIIRRMFLMESAYIGILGCVIGIIISYGVSYLVNLAVPMILAATSGGDAGDLNYTFSYIPASL
VIIAVVICGGVAVISGMNPARKATKTNVLTALRREL

Sequences:

>Translated_436_residues
MRFKDQVHFIRRNMKKNRLRVFMTILATTMACAFLVVLSSVGFGIQKTITDMTMSQQIVTKVSVMGKEGDKPIKKADLEK
YDHVRSVVERTQVYEPNKATLGNRTNESSNLIFTNMNDELKANMELEKGRVAKSENEIVVGYDFAKRLLTKKESEEYNKK
IEEAKGNPEDIKEPKGYTKDILNKTIELSVSKTDSKTGDVTKTKTYDFKIVGITKKPSQDWMEDSNIFISDQFKKDFSEF
LDFKGGNVETNIGVFADKFENVEQLTNDLTDDGYYVTSVTTELEGANTFFMVFKIGLIFVGCIAVIISAIGIFNTMTMAV
TERTQEIGIMKAIGASPSIIRRMFLMESAYIGILGCVIGIIISYGVSYLVNLAVPMILAATSGGDAGDLNYTFSYIPASL
VIIAVVICGGVAVISGMNPARKATKTNVLTALRREL
>Mature_436_residues
MRFKDQVHFIRRNMKKNRLRVFMTILATTMACAFLVVLSSVGFGIQKTITDMTMSQQIVTKVSVMGKEGDKPIKKADLEK
YDHVRSVVERTQVYEPNKATLGNRTNESSNLIFTNMNDELKANMELEKGRVAKSENEIVVGYDFAKRLLTKKESEEYNKK
IEEAKGNPEDIKEPKGYTKDILNKTIELSVSKTDSKTGDVTKTKTYDFKIVGITKKPSQDWMEDSNIFISDQFKKDFSEF
LDFKGGNVETNIGVFADKFENVEQLTNDLTDDGYYVTSVTTELEGANTFFMVFKIGLIFVGCIAVIISAIGIFNTMTMAV
TERTQEIGIMKAIGASPSIIRRMFLMESAYIGILGCVIGIIISYGVSYLVNLAVPMILAATSGGDAGDLNYTFSYIPASL
VIIAVVICGGVAVISGMNPARKATKTNVLTALRREL

Specific function: Part of the ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential). Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family

Homologues:

Organism=Escherichia coli, GI1787105, Length=144, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTRF_BACSU (O35005)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   D70000
- RefSeq:   NP_390919.1
- ProteinModelPortal:   O35005
- EnsemblBacteria:   EBBACT00000002101
- GeneID:   937247
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30410
- NMPDR:   fig|224308.1.peg.3044
- GenoList:   BSU30410
- GeneTree:   EBGT00050000000612
- HOGENOM:   HBG338245
- OMA:   TMAVTER
- ProtClustDB:   CLSK887753
- BioCyc:   BSUB:BSU30410-MONOMER
- InterPro:   IPR003838

Pfam domain/function: PF02687 FtsX

EC number: NA

Molecular weight: Translated: 48422; Mature: 48422

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11d86f48)-; HASH(0x118ceab8)-; HASH(0x11af079c)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKDQVHFIRRNMKKNRLRVFMTILATTMACAFLVVLSSVGFGIQKTITDMTMSQQIVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KVSVMGKEGDKPIKKADLEKYDHVRSVVERTQVYEPNKATLGNRTNESSNLIFTNMNDEL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHH
KANMELEKGRVAKSENEIVVGYDFAKRLLTKKESEEYNKKIEEAKGNPEDIKEPKGYTKD
HCCCCHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHH
ILNKTIELSVSKTDSKTGDVTKTKTYDFKIVGITKKPSQDWMEDSNIFISDQFKKDFSEF
HHCHHEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCHHHHCCCCEEEEHHHHHHHHHH
LDFKGGNVETNIGVFADKFENVEQLTNDLTDDGYYVTSVTTELEGANTFFMVFKIGLIFV
HCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHH
GCIAVIISAIGIFNTMTMAVTERTQEIGIMKAIGASPSIIRRMFLMESAYIGILGCVIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IISYGVSYLVNLAVPMILAATSGGDAGDLNYTFSYIPASLVIIAVVICGGVAVISGMNPA
HHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHH
RKATKTNVLTALRREL
HHHHHHHHHHHHHHCH
>Mature Secondary Structure
MRFKDQVHFIRRNMKKNRLRVFMTILATTMACAFLVVLSSVGFGIQKTITDMTMSQQIVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KVSVMGKEGDKPIKKADLEKYDHVRSVVERTQVYEPNKATLGNRTNESSNLIFTNMNDEL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHH
KANMELEKGRVAKSENEIVVGYDFAKRLLTKKESEEYNKKIEEAKGNPEDIKEPKGYTKD
HCCCCHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHH
ILNKTIELSVSKTDSKTGDVTKTKTYDFKIVGITKKPSQDWMEDSNIFISDQFKKDFSEF
HHCHHEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCHHHHCCCCEEEEHHHHHHHHHH
LDFKGGNVETNIGVFADKFENVEQLTNDLTDDGYYVTSVTTELEGANTFFMVFKIGLIFV
HCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHH
GCIAVIISAIGIFNTMTMAVTERTQEIGIMKAIGASPSIIRRMFLMESAYIGILGCVIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IISYGVSYLVNLAVPMILAATSGGDAGDLNYTFSYIPASLVIIAVVICGGVAVISGMNPA
HHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHH
RKATKTNVLTALRREL
HHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377